CI01000046_06456550_06456910


Basic Information

Item Value
gene id CI01000046_06456550_06456910
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6454928 ~ 6457126 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_06456550_06456910.mRNA
AAACTCAATCTAGCGCTCATTCCGGTAGGAGCAGGTACGCGCGAGCCGTACCCCTCCCCAGGCGCAGATGGTTCCTTCCAGCTGGACTGAAGCGATGCTGATGATGTCAGAGCGCGGAGTGAGGCTGAGCTCCGCGCGAGCTGAGATGATGGCGAGCGCGCTCACAGCATTCCAGTCTCTATAATACAAAGCGTTCAACAGCGCATCATCATAACGATGGACGGCAATGTCTTCCCCGACCAAGAACAGCTGCTGGTATTCCTGAAAAAGCTCAAAGAAGTGTTCGACGTGTGCGACGAGGACGCAGACGGATATATTCGGGTTGAGCACTTCGTGGACCTCGGTCTACAGTTCGGCCAAGGAGATGAAGTTGGCTTATTCACATATCTTATTTTGCGTAATTGGTGCGGGACGCGTATGGCGCTATAGTTTTATATTTGGCTACTGGCAGTTTAATAATTGCACTTCCGCCAAGTAACCAAGACAACTGTCTCCTCACTCTCCTTCATAAACTGTGATGTCATCAGCCATCACTTACAGATTCAACAGTTCATGTTTTTTTTTTGTTTTTGGAAATTTAACAGAAGCAGGAATACATCACAATTTTAATTCCACAATAGACCAGTTAAAATGGCAAAATGTATTTAAATGGATAGTTGACTTATTGTCCAAACAAAATATAGATGTCCTTAAAGGGACAGTTCACCAAAAAATGAAAATTCTGTCATCATTTAGTAGTCACCCCTCTTATCTTATGTTGTTCCAAACCTTTATGAAAGAAGACGTTTTTTTTTTTTTTTTTTTTTTAATAATAACGTTGGTAATAAAAAAAGTTTCCATTCCCTTTGACTTCCACTGAATGGACAAAAAATACAAAGGAAAGCAATGGGAACCGAAACTGTTTGGTTACCAACATTCATCAAAATCTTTTGTGCTTCACAGAAGAAAGAAATTCATACAAGTTTGGAATGACATGAGGATGAGTAAATAATGACAGAATTTACATTTTTTGGGTGAACTATCCCTTTAACATGAATGTAAAATTCATTCAGTTTTTCCCTTCGCCGGGAGTTTGATTGACAGGCGATCTAACCAATCATAACGCCGAATCCGCCATTTTGTCCGACAAAGCAGTCAGGGGGGTTAGTAGATTAACGTTAGTGGGCTTGAACTTGAAAAATGATGTGTACTGACGTCTTTCTGTGGTTGAAATGTGGTTTATTCATGTTTATTTGATGATATAAATTAACTAGTAAGAAGAGATGATTTGTTCATGAGCTGCTTGATCTGAGGCGTTACAGCGATCTGTCACGACACATTAAAGAGCCAAAAAACGGTATTTATTGTTTAAATTTCTTTAAAAAGACAAAATTTGAGACTGTTTCATATCAAAAGTAACCTGCTCTGCCTTGTCTGTCGACGCATTGTCAGCTTCCTCTTTGCTCCGCGATGTATTTTTCACTGCGTGAGAACATGATGTGGCGTGAGAGCGCCATGGCTTGTCGGACATAGCAACAGTAACTAAAGGGGGCGGGTCTTTGCGAACGGTCAATTAAGACAATTATTTCATTGAAAATACAACATTGCAGTTCTATTATGTTTCAAAATGAGATGATGCACTTGTTTAAACAAGGCCATGGGGGATTCATATCGTTGCTGAATGCCATTCCAGCATGTCCGATAATGTAGAAATATTATGTTTGGTAAAGGTTAACATGATCTACTATCTTGGGTAATTATTTGGTCAGAAAATAGACAAATTACCTAATGGTTTTCCCCATTTGTTGTACTGAAGACATTGTGATACTTGGCTTAAACATCATACAGGATACATTGAAAACTACATATTGAAATTCTTAAGCAGCCCTTTTTTAGCTTTGGTAATCAAAATCACCGTTAATTTAATTTTTAAAGTTGATCATGATGTAATGTGCGTTCTGTTGTTTGTAGAATAATTCTCATCTCAAGCAGTGCGCAGTAACTGTAGATCTTGACCTTGCATTTCTGGCTTCGGTGGTTCAATGTGTGCTTCTTGAAGACCTGCCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_06456550_06456910.mRNA True 2051 mRNA 0.39 2 6454928 6457126

Neighbor

gene id symbol gene type direction distance location
CI01000046_06399300_06413564 RAB11FIP4A, RAB11FIP4 coding downstream 41364 6398667 ~ 6413564 (-)
CI01000046_06349776_06359655 SUZ12A coding downstream 93660 6349245 ~ 6361268 (-)
CI01000046_06312028_06323678 NA coding downstream 131078 6311530 ~ 6323850 (-)
CI01000046_06223230_06251304 CASKIN1 coding downstream 203624 6222779 ~ 6251304 (-)
CI01000046_06192265_06195160 GNG13B, GNG13 coding downstream 259302 6190292 ~ 6195626 (-)
CI01000046_06460451_06464009 COIL coding upstream 3325 6460451 ~ 6464335 (-)
CI01000046_06471554_06479199 ENGASE coding upstream 13959 6471085 ~ 6479491 (-)
CI01000046_06619452_06652257 GNA13, GNA13.S coding upstream 162040 6619166 ~ 6652257 (-)
CI01000046_06664434_06673031 COG1 coding upstream 206434 6663560 ~ 6673535 (-)
CI01000046_06676701_06682877 ROGDI coding upstream 218853 6675979 ~ 6684823 (-)
G199106 NA non-coding downstream 2151 6452375 ~ 6452777 (-)
G199097 NA non-coding downstream 74924 6379574 ~ 6380004 (-)
G199027 NA non-coding downstream 76733 6375798 ~ 6378195 (-)
G199119 NA non-coding upstream 97421 6554547 ~ 6554754 (-)
G199121 NA non-coding upstream 99573 6556699 ~ 6557033 (-)
G199126 NA non-coding upstream 112434 6569560 ~ 6569967 (-)
G199128 NA non-coding upstream 114590 6571716 ~ 6572021 (-)
G199130 NA non-coding upstream 131051 6577980 ~ 6594210 (-)
G199014 NA other downstream 79522 6364178 ~ 6375406 (-)
G199054 NA other downstream 357254 6097359 ~ 6097674 (-)
G198265 NA other downstream 2654827 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 3587134 2866070 ~ 2867794 (-)
G196463 NA other downstream 4286284 2168266 ~ 2168644 (-)
G199181 NA other upstream 369559 6826685 ~ 6830453 (-)

Expression


Co-expression Network