G199027


Basic Information

Item Value
gene id G199027
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6375798 ~ 6378195 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU225891
AAAAGTATAAATTTCTTATAAAAAGAGAAGAGGGGTTGTTGACCGCTGCCATAGATTAATGCATGTGTTTCTGGGCAGTTTCGTACCTGACATATGTTTCTGTGGATTGAAATTACATTAATTAAAAATTCATCATGATATTTTATCAGGATAGGCTAAAACAAACTGCCATAGTGATTAATTTTGAATAACAGGGTGACTACAGTCATTGAATCAGTTCTATTTGTAAAAAAGAAGACAGAATAACTATGCAGCTTCAAAGATTGGCTTTTATTGAAATTTATGAGATTGATTCCAAACCATTGTGAGTTCAATAGGAAGTTGATATCCTGACTTGTTGCTTCTGGTGGAAATGAGCAAGCATGTGACTTGTTGTCCCCATGTGGGTGTAAGTGCTGGAGTTAAAATGAATACCAGAAATACTTCTATTATTATCTTTAACATTTATACACATTTGTGAGAGAGCAATAGAAGACATTGGAAACATTTTTGAATAGAAATTAACATCTGGTATGTGCTTTTATATTATCCAGTACATGAATCCACAGGATGTGTGACCTTTAAAGTGCATTCTGTTTCTCAGTGTGTGTGAACAACTTGTATCTGGTCTGGATAATCTATCTAGTTCTCCTGTTTCTGACCTCAGCGCAGGTTCAGGAGGCCTGAGGGATGACATACACTGAGATGAAGTGTGCAGAAGAAGGACCTCGTTTCTGTATCCCATTAACATCACCTCGTAAAATGCTCCTACACGACATGAGCAAACTGACACCCATATGTTAGCTGGCTCAGCTTTCTGCAGGTATGGCATTTTTGGTTTTCATTTAGCCCTTGGCTCGCACAGTGGTGATGGATTGTCAGAAAACGACGTGGTTGCGGGTGTAGGGCATGGCATAAGAATGTACCCGGCTCTCTATCAAGCCATTTGTGCATTTCTGTGTGTTGTTTTGCCCTGGCAGAAGTAGCCGCTAATCTGTGTCTTATATTAGCGTCAGGAAATTCACACCTTACCAGTGCGTCCATCGCATATTTAGAAAATTACTCCGCTAAGGAACTTTAAATAGAAGTAAACTAACTGCATAACAGCTGATGTATTCATTAGGGTTTATTACGCATCTATTACAAAACATACCCGGTCTTAAATTGCAAATTAACTAACTGCTAATTAAGGTCATCACAATTTTGGCATCTGACAGCACATGTCAACTTAGAATGCTGATGTTAACTTCCATTAGAGAGTCATGGGTTGAATTTCACACAAGCAACAGGCTCAGGATAATGTGTGTGTGTGTGTGGGTTTCCTCCGTGGCCTCTGTCATAAACACTGACTTGTTAATCCTGTGGGTCAAATCGCTGGGCTGTTGGAAAGGAGTGAGAGATGCTGAGAATACCTGGCTATATTAAGCCACCCTCTTCATCAAAAACATCCTCTGTCTCAATTAAAGGGATAGTTCACCCCCCAAAAAATTAAAATTCTTTCATCATTTACACACACATTCATGTCGATCCAAACCTGTATGACTTGCTTTCTTCTGTAAAACACAAAAGAAGATATTTTCGAAAATGTTAATTGTCCATTTATTAAAAGTGAATGGGGTCTCCATTTGGACTCCACTGATTTTCATTATTTGGAAAAGAACATGTGAAACATGTTCAAAATAACTTTTTTATGTTCCACAGAAAAAAAAAGGTTTGGAATACATATAATATATAATATATAATGATGACATAAATAATGACAGAAAGTTCATTTTTGGGTTGACTATCCCTTTAAACTACATAAAAAAATATATATTTTCCTATTAGGACATAGAAATACTTTTCATTAAGAACATTTTTTTATCATTATCAATGTTAAAAACAGTTGTGCTGCTTAATATTTTTGTGGAAATGGTGATACATTTTATTTTTCAGGACTCTTTGATGAATGGAAAGTTTAAAAAATAAATCTTTTGTAACATTATTAATGTATTTACTGTCCCTTTTGATCAATTTAACGCAATTCATGTTGAATAAAAATATTAATTTCTTAAAAAAACCCAAAAACTTTCTGACCTGAACTTTGGAACAGTATTGTTTCCTTAACATGCTTAACATGTTAACTTAACAATATTCCTTAACAATATCACTGTTTTACTGTATTTTTGATCAAATAAATGCAGCCTTGATGAGCATAAGAGACTTCTTTTAAAAACATTAAAAAATCAGTTTTAAAAACACTTTACAATAAGATTTCATTAGTTAATAATATTTAACTACATTAGTTAACATGAACTAACAATGAACAATACTTCTACAGCATTTATTATTAATGTTAACTTTTACATTTACTAATACATTATTAAAATCAAAAGTTTTATCTGTTAAAGGGTTAGTTCACCCAAAACAGTGCATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225891 True 2398 lncRNA 0.34 1 6375798 6378195

Neighbor

gene id symbol gene type direction distance location
CI01000046_06349776_06359655 SUZ12A coding downstream 14530 6349245 ~ 6361268 (-)
CI01000046_06312028_06323678 NA coding downstream 51948 6311530 ~ 6323850 (-)
CI01000046_06223230_06251304 CASKIN1 coding downstream 124494 6222779 ~ 6251304 (-)
CI01000046_06192265_06195160 GNG13B, GNG13 coding downstream 180172 6190292 ~ 6195626 (-)
CI01000046_06171463_06172702 DCTN5.S, DCTN5 coding downstream 201166 6171006 ~ 6174632 (-)
CI01000046_06399300_06413564 RAB11FIP4A, RAB11FIP4 coding upstream 20472 6398667 ~ 6413564 (-)
CI01000046_06456550_06456910 NA coding upstream 76733 6454928 ~ 6457126 (-)
CI01000046_06460451_06464009 COIL coding upstream 82256 6460451 ~ 6464335 (-)
CI01000046_06471554_06479199 ENGASE coding upstream 92890 6471085 ~ 6479491 (-)
CI01000046_06619452_06652257 GNA13, GNA13.S coding upstream 240971 6619166 ~ 6652257 (-)
G199073 NA non-coding downstream 244029 6131304 ~ 6131769 (-)
G199072 NA non-coding downstream 244778 6130073 ~ 6131020 (-)
G199071 NA non-coding downstream 246120 6129419 ~ 6129678 (-)
G199097 NA non-coding upstream 1379 6379574 ~ 6380004 (-)
G199106 NA non-coding upstream 74180 6452375 ~ 6452777 (-)
G199119 NA non-coding upstream 176352 6554547 ~ 6554754 (-)
G199121 NA non-coding upstream 178504 6556699 ~ 6557033 (-)
G199126 NA non-coding upstream 191365 6569560 ~ 6569967 (-)
G199014 NA other downstream 392 6364178 ~ 6375406 (-)
G199054 NA other downstream 278124 6097359 ~ 6097674 (-)
G198265 NA other downstream 2575697 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 3508004 2866070 ~ 2867794 (-)
G196463 NA other downstream 4207154 2168266 ~ 2168644 (-)
G199130 NA other upstream 199785 6577980 ~ 6594210 (-)
G199181 NA other upstream 448490 6826685 ~ 6830453 (-)

Expression


Co-expression Network