CI01000046_06399300_06413564 (RAB11FIP4A, RAB11FIP4)


Basic Information

Item Value
gene id CI01000046_06399300_06413564
gene name RAB11FIP4A, RAB11FIP4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6398667 ~ 6413564 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_06399300_06413564.mRNA
CACGGGGAGGGGAGTCTGGGACCCCCGATCATTGTGTGCACGCGGCCGTACCCAGAGTGCCAGCTGTATTCGGATGAGGAAGGAATGGGTGGACGGGATGCGCAGGAGTCAGACATGGACAGTGCTGCTGACAGCGGAGCAGGATCTGAATCTTCTGAAGGAGGACGTCATGAGGATAAAGAGGACGGACTGGGTGGACTCTATCTACGTGGAAACAACTGTGGTCAGATGGTCTCGTCAGCAGCGGCCTCAGTAATCTCAGTGGAGGAGCAGTTTGAGGACTATGGAGAGGGAGAGGATGTGGACTTCACTCCCAGCAGCCCCATCCCTGATGATGACACACGTACTAATGGTTTCTCTGACCTGGGCTCCTCTCTGCCCTCCAGTGCTGGTCAGACCCCTCAGAAGATCAGACACCTGTACAACAGTGAGCTTCTGGATGTTTACTGCTCTCAGTGCTGCAAGAAAGTCAACCTGCTCAATGACCTAGAGGCCAGACTCAAAAACCTCAAAGCTAACAGCCCAAACAGGAAAATTTCCAGTACAGCATTTGGTCGTCAGCTCTTCCACCACAGTAACTTCAGCAGCAGTCAGGGCAGCACAGAGGATCTCTTCAGAGACAGCATCGACTCCTGTGATATTGACATCACTGAAAAGGTGAGTTATTTGGAAAAGAAGATCACAGAGCTTGAGAACGACAGCCTGGCTAATGGAGATCTGAAATCCAAACTTAAACAGGAAAACACACAACTAGTTCACAGGGTACATGAGCTGGAGGAGCAGATCAAAGATCAGGAAACTCGTGCAGAGCAATGTCTAGAGGAGGAGCTGAAGAGACACAGAGAGGCCTACAGTAAGATGGAGAGAGACAAGAGCACTGAGATTGAACTGCTTAGTAACAGGGTCCAGCAGCTAGAAGAGGAGAACGCAGAGATGAAAGTGAACGTGTGCAGACTCAAGTCTCAGACTGAGAAACTAGACCAGGAGAAGCAGCGTATGACAGATAAACTGGAAGACACAAGCCTGCGTTTGAAGGATGAGATGGATTTGTACAGGAAAATGATGGATAAGCTTTGGCAGAACAGACACGAGTTTCAGAAGGAGCGAGAGGCCATGCAAGAGCTGATTGAAGACCTGCGGCGTGAACTGGAGCACCTGCAACTCTTTAAACTGGAGACTGAGAAGCCCGGCCGTGGCCGTAGTGCTGCAGGACTGTCGGAGTACAATGCCAAGACTCGAGAGATTGAACTGGAGCACGAAGTAAAGCGGCTTAAGCAGGAGAACCATAAACTCAGAGACCAGAACGATGATCTCAATGGACAGATTCTCAGCCTCAGCCTATATGAGGCCAAAAACCTGTTCGCTTGTCACACCAAGGCCCAGTCACTGGCAGCAGAGATAGACAACGCCTCCAGAGACGAGCTGGTTGAAGCATTGAAAGAACAAGAGGAGATCAACTTCCGTTTAAGGCAGTACATGGACAAGATCATCTTGGCTATCCTCGATCACAACCCCTCCATTTTAGAAATCAAGCATTAGGCTTCTGAGCTGAGAGCAGATAGAGGACTCAAACTTGGTAGAGAGCTCCCCCTTCAGGCCGGGGGTTTGAAATGTACCCCCTTAAACCAAGTCATAATGTATTTACAGAGCAAATTGCTGTAAAAATTATCGTGTCTCTCATGTGCCCTGCCTCACGCACACACGGGTTACAGTTTCCATTTCCATGCTATGAGTTTAGGCTGTAGAAATGACACAGACAAGTGATGAAACTGGAATATAGAGTAGAAGTGTACTTTTCACTCTCAGTTATATATACACACTACCTCTGAGTATGTACAACTCAGTGTTGTATTCTACACATGAACAAAACAAGTAGAATTATGATAAATATCACATGATCACACCATATAGGAGAGCTATACGTGCACCCTATGGCATGTGGGGTTTATTATTACTATTATTATTATTATTATTTGAACATTTTAATCAGCCCTATAGACCTTCTCTATAAAGTACTGTTTGCCTGTATGAAGTTTTAACAATCCAGCGCTGAATCAATGGACAGAGCAATAGAAAGACATGACTGTATAATAACTATAATCAGCAGATAAGGGAACTTCCTTTGAATGTTCTCTGCCAACATACATTGTGGTCTGCTGTGAAAATAATAAA

Function

symbol description
rab11fip4a Predicted to enable protein homodimerization activity and small GTPase binding activity. Acts upstream of or within eye morphogenesis and regulation of cell cycle. Predicted to be located in endosome. Predicted to be active in cleavage furrow; cytoplasmic vesicle; and midbody. Predicted to colocalize with centrosome. Is expressed in several structures, including immature eye; nervous system; optic primordium; otic vesicle; and pleuroperitoneal region. Orthologous to human RAB11FIP4 (RAB11 family interacting protein 4).
rab11fip4 Enables protein homodimerization activity and small GTPase binding activity. Involved in regulation of cytokinesis. Located in cleavage furrow; cytoplasmic vesicle; and midbody.

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K12485 RAB11FIP3_4; Rab11 family-interacting protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_06399300_06413564.mRNA True 2172 mRNA 0.47 12 6398667 6413564

Neighbor

gene id symbol gene type direction distance location
CI01000046_06349776_06359655 SUZ12A coding downstream 37399 6349245 ~ 6361268 (-)
CI01000046_06312028_06323678 NA coding downstream 74817 6311530 ~ 6323850 (-)
CI01000046_06223230_06251304 CASKIN1 coding downstream 147363 6222779 ~ 6251304 (-)
CI01000046_06192265_06195160 GNG13B, GNG13 coding downstream 203041 6190292 ~ 6195626 (-)
CI01000046_06171463_06172702 DCTN5.S, DCTN5 coding downstream 224035 6171006 ~ 6174632 (-)
CI01000046_06456550_06456910 NA coding upstream 41364 6454928 ~ 6457126 (-)
CI01000046_06460451_06464009 COIL coding upstream 46887 6460451 ~ 6464335 (-)
CI01000046_06471554_06479199 ENGASE coding upstream 57521 6471085 ~ 6479491 (-)
CI01000046_06619452_06652257 GNA13, GNA13.S coding upstream 205602 6619166 ~ 6652257 (-)
CI01000046_06664434_06673031 COG1 coding upstream 249996 6663560 ~ 6673535 (-)
G199097 NA non-coding downstream 18663 6379574 ~ 6380004 (-)
G199027 NA non-coding downstream 20472 6375798 ~ 6378195 (-)
G199073 NA non-coding downstream 266898 6131304 ~ 6131769 (-)
G199106 NA non-coding upstream 38811 6452375 ~ 6452777 (-)
G199119 NA non-coding upstream 140983 6554547 ~ 6554754 (-)
G199121 NA non-coding upstream 143135 6556699 ~ 6557033 (-)
G199126 NA non-coding upstream 155996 6569560 ~ 6569967 (-)
G199128 NA non-coding upstream 158152 6571716 ~ 6572021 (-)
G199014 NA other downstream 23261 6364178 ~ 6375406 (-)
G199054 NA other downstream 300993 6097359 ~ 6097674 (-)
G198265 NA other downstream 2598566 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 3530873 2866070 ~ 2867794 (-)
G196463 NA other downstream 4230023 2168266 ~ 2168644 (-)
G199130 NA other upstream 164416 6577980 ~ 6594210 (-)
G199181 NA other upstream 413121 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location