AMCG00003481


Basic Information

Item Value
gene id AMCG00003481
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5335491 ~ 5339847 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003481
GTGGCACGGCAGCGGCGGAAGTGAGCTCTCGGCGAGGCCGGAAATACGTCATGAGTGCCGGCCGAGGTCAGACAGGATGGGCAGCGCGGCGTGTGCGGCGGGGACTCTGCGCCTCTCACTGCGGAGTCTGCAGGTGATGTCAACAGAATGAGCACCGGGGCTTATTATTGCTTTAGGTCAGCTGTGAGTCCAGCCTGCGTGTGGTTATTAAAGCAGCGCGGCAATGTCATGTCCTCAGTAACCGGTGGAGCTACTCGTAGTCCTGTACAGTGCGGACAGTCATGCATGTCAGTAGCTCTTGCCCGCGACTTTCTCGCTGGTGCATTTGAATGTGTTTCACTGGGCTGGTATTGCATTGTTTGTAATAGGTTATACACGGAAGTCCCCACCGATCCTTACTGTAGAGCCGGTGCGTTAACCTTACATAGGCGGTACAGCTCACACTGAGTTAACAGTCACTGTCTGCACCGCGGGAGTAATGTGCGCTTTATGTGATCCATCCGTGCAGGCCACAGCGCTGCTGAGAGCTCGCGCCTGCGCACCACGGCACCTCTGGAGCGGCCGGCTCCTCTCATTATCTCCAGCAGCAGGACTCCACACCACGGCCCCTCGCTGCTCCGCGCCTCCCGCTATCAGAGAGACCGAAGAGCCCGACCAGCTGTACGAGAGCGTGTCGGTTCTGGTCAAGGGCCACGACCGAGCTGTCCTGGACAGCTATGAGATCTTCGCTACTCTGGCTGCTCAGGAGTTGGGCCTGAACGTTGTCAAAGTatttgagcCCCCAAAGAAGATTGAGAGGCTGACCCTTCTGAAGTCTGTCCACATTTTTAAGAAGCACAGGGTCCAGTATGAGATGAGGACCCATCATAAGTGCATTGAGCTGAAGCATCTGACCGGCTCCAGCAGCGCTGTGTACCTGGAGTACCTGCAGCGCAACCTGCCCGAGGGTGTCGCCATGGAGGTCACAAAGACTGCCATAGAGAAGATCCCGGCGCATGTGAAGCAGCCCTTGTGGAGCTCTGTTCCCCTGCAGGAGCAGCCCAGCCCCTGAGGGGGGGAGACCGCAGTGCCCTGTCCCTCATGAAACCCAGTGAGGGCAGTTCTCCAGAATCCAGGTCCAGCTGTGGATTCAGTTTAACACTTCCCAAACCAGTACTCCCCCCCCGCCCATAACCACAAGAGCCGACGATGGGCTCCTTAAAAAGACTTCCTGCAGAGAGAGCTTTAATCGCATCACAGGAGTCCAGCTGCTGCTCAGTGGTGActtctcctgtctgtctgtgtgcaggagTGTCTTTGTCCAGGACCCTGCTGCTCTCAGACATGTCGGTATGTCCTGCATGCCCACAGAGACCAGGCCGCTCTCCAGCACATCCCAGGCCTGTGCCGTCCTCCGTGATTAAGCATTGTGTTCAATGGTGGTCTGGTAATAAAGctatttaatttccttaaagGCAAGTTGCATCTTTCTTGTCATGCCTGCATTACAGAAGGCTTGGGCTGGTAGAACCCCATTAGGGAAGGGACCCACATCAGTCTGTGCATCTGGCGACCGTCGGCCCATTTCAGTGGCGTTCTGCGAATGCAGGTGGATTCTCTGAGCTGCCTTTAGCACCTGCTGTTTAATGTCAATGTGGTGGAAGCGGATTTATTATATTGCTGGGTGACTTCAGAACGTGCAGATGTGTGATTTCACTGCTGGACAGCAACATTTATTTGCTACATAAATAATGGGGGGAGAACTGTGTAAATCCAAAACTGGCATTATTCACCACAATACGCAGAACCTTCCTGAGCATTGAAATTGCTTGACATCTCCTGTCCTAGTATGTGTTGCTACATCACAGGAGAGGAAGGACTGCGTTTTGATTGCTTTGGTTGTCATGCGTTACAGTGTGACGGACTCATCGATCCAGAGGGAAATGCCTGCTGTCACACGTCTGTGTTCTGCTTTCATCTAATAACACTCAATGTCTGGTGCGAGCGCTTCCGTAGAGCAGCGTCTACATCGTCATTCGAACAGGATCAAACTGTGGCCGAGCTGCCCTTCACAGCTGTGGAGAGGATGTGATGATTGACATGTTTTTATGGTATTGCAGATATTGATATTAAATAGCGTTCAATTTACCAATCGAATTATATCTGCAGATTTGactcctgtgtttgtgttttaataaccTAAACAAAGTAGAAC

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02946 RP-S10, MRPS10, rpsJ; small subunit ribosomal protein S10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003481 True 2194 mRNA 0.53 6 5335491 5339847

Neighbor

gene id symbol gene type direction distance location
AMCG00003478 LOC108428732,LOC107594120,LOC107734000,LOC107552030,LOC106571024,LOC103363535 coding upstream 148218 5175015 ~ 5187273 (+)
AMCG00003475 NA coding upstream 640154 4689484 ~ 4695337 (+)
AMCG00003468 NA coding upstream 791730 4541643 ~ 4543761 (+)
AMCG00003474 NA coding upstream 863760 4471337 ~ 4471731 (+)
AMCG00003467 eif2b4 coding upstream 900024 4427711 ~ 4435467 (+)
AMCG00003485 NA coding downstream 39181 5379028 ~ 5402540 (+)
AMCG00003487 NA coding downstream 123912 5463759 ~ 5506907 (+)
AMCG00003495 NA coding downstream 412296 5752143 ~ 5753261 (+)
AMCG00003498 NA coding downstream 427511 5767358 ~ 5769937 (+)
AMCG00003497 NA coding downstream 484734 5824581 ~ 5825732 (+)
G752 NA non-coding upstream 781846 4552898 ~ 4553645 (+)
G742 NA non-coding upstream 851221 4483890 ~ 4484270 (+)
G690 NA non-coding upstream 955672 4326653 ~ 4379819 (+)
G684 NA non-coding upstream 960552 4296559 ~ 4374939 (+)
G646 NA non-coding upstream 1245172 4086896 ~ 4090319 (+)
G907 kbtbd11 non-coding downstream 210898 5550745 ~ 5556306 (+)
G908 NA non-coding downstream 217760 5557607 ~ 5558515 (+)
G960 NA non-coding downstream 489612 5829459 ~ 5829745 (+)
G983 NA non-coding downstream 615757 5955604 ~ 5955820 (+)
G990 NA non-coding downstream 646191 5986038 ~ 5986394 (+)
AMCG00003480 NA other upstream 739 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 813091 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 880349 4452564 ~ 4455142 (+)
G1012 NA other downstream 1147845 6487692 ~ 6494905 (+)
AMCG00003524 rps7,LOC107668222 other downstream 2158193 7498040 ~ 7504015 (+)
AMCG00003534 id2,LOC106566577 other downstream 3309278 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 3560609 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 3736043 9075890 ~ 9106765 (+)

Expression


Co-expression Network