AMCG00003485


Basic Information

Item Value
gene id AMCG00003485
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5379028 ~ 5402540 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003485
GGTCCTCCCGCCTCCCGGAGTCTGCGCAGTGGGCATCGCGCTGTGGGACAGAGCGCGGAATCCAAGCTCCGCGGGATTTGCCCGGGATCGCTGCTGGGGCGTCGAGACGAAGATTGAAAGGACATGTCTAAACGAAAGCACAGCTCCTCAGCCGGGACCTCGCAGAAGCGCGCCCGGCCTGCACAGCCGGAGGAGGCGGACGAGGAATCGGATGAGCCCCGGGACGTGCACCCCGCGCACAACACACACCTGACTTCAGGGGAAGTTGGCATCATCGAAAGCATTTCTTTGAAAAACTTCATGTGCCACGCTCTGTTGGGACCGTTTACTTTTGGGCCAAACGTTAACTTTGTTGTTGGAAATAATGGGAGCGGTAAGAGCGCTGTCCTGACGGCCCTGATTGTTGGCCTTGGTGGAAAAGCCCATGCGACAAACAGAGGGTCCTCTTTGAAGGGATTTGTGAAAGAAGGAGAAAGCTCTGCAGACGTCTCGATCACTTTACGCAACAGAGGGCCAGATGCCTTTAAACCTGAGGTATATGGTGATGGCATCATCGTAGATCAAAGGATTTCCAGCGATGGTGTGAGATCCTACaagttaaaaagcaaaacaggTAATCTTGTGTCGGCGAAGAAGGAGGAGCTCATCGCACTTCTGGATCACTTCAACATCCAGGTCGATAACCCCGTGTCCATTTTAACTCAAGAAATGAGCAAACACTTCTTACAGTCCAAAGGTGAAGGGGACAAATACAAGTTCTTCATGAAGGCCACTCAGCTGGAACAGATGAAGGAAGACTACACTTACATTATGAAAACCAAAACCGTCACACAGAATAATATTGAGAAACATGAAGAGAGTCTAGATGATCTGAAACGTCAGTACTTAGAAAAGGAAGACAAGTTCAAGAGCCTGGCGTCTCTAGATGAGATGCACGACaagctggaggagctgaagcACCAAATGGCCTGGGCTCTGgtaactgaaattgaaaaacaattgcAGCCGATGAGAGAGAGGATTTCGGCTGAAGAAAATGGCACCGTTAAGTTTGATCAGAAAATAGAGGAATGGAAGGGCAAAGTTGTAGAAGCTGAGAGGAAGTACAAAGCTTACTTTGATCAGCTGGAGAGTGTCAGTGAGAGGGTGCAGGTCCTGGAGCCACAGTGCCGATCTCTGAAGGAGGAATCCCAGGCCAAGAGCAATGCCTGCAAAGCTGCCGAGGCTGCTTATCATCGCAATATGACTAATCTGAGGCACTTGGAGAAGGACAAAGAACAGCTGACTAAGCGCATCAATGAGCTCAAGAACAGCGTCAGCCAGTCCACCGAGGCAGACCGGCTGCAGAGACTGGACCGAATCAACCGGCTCCAGCAGGAGCTGCAGGCTTTGAGAGACCAAGACGCCACCCTGAGTCAACAGCAGGACCAGTTCCAGCAGGTCATCGGGAAGTACAGAGAAGAGGTGGCCAAGTTGAGACGTGAAGAGCAAGATCTTCAAAGACAAACTGAAGCCAAGAGGAGGGATCTGAGGGACATGCAGGCCAGTAGAACGGATAAGATTAAAAGGTTTGGGGTGCAGATGCCTGGCCTGCTGGCAGCAATCGATGATGCCCACAGAAAGGGACAGTTCAAAGAGAAGCCCATTGGACCTCTCGGGTTCTGCATCCGGCTGAGAGACCCCATACTTGCCCTGGCCATCGAGAGCTGTCTGAAGGCTCTCATGAACTCCTTCTGCTGTGATAACTATAGGGACGAGAAGATCCTGCAGGCCATCATGTCTCGACACTACAATCAAGGCCGGAGACCCCAGATTATTGTGGGCGAGTTTTCACGCACACTGTACAACATAAGAGACCgagcCGTCAATCACCCAGAATTCCCCACTGTACTCCAGGCCTTGGAAATCGAGGATCCGGTTGTAGCAAACTGTCTCATAGACATGAGAGGCATAGAGACAATTCTGCTCattaaaAACAACAGCATGGCGCGTCGTGTGATGCAGAGTGGGAATCCGCCCAAGAACTGCCGCGAGGCGTTCACTCAGGACGGGGACCAGGTCTACATGAACCGCTACTACTCCTGCGATCAGAAGAGAGCTCTGTACCTGAGTGGGGATGTAGAAGAggaaatcagACAAATCGGTGCAGAAATCGAAAATCAACTTGCGCACATTGCCAAGTTCAATCAGCGAATCCACGCGTTAGAAGATGAAATAAGGAATAATGAAAATCTGCTTCGAAAAACGCATGAAAATAAGAAGAGAGTGAAGGACaatatgagaaaaatacaatttgaaattgGTGATCTGCAAAATGTAGAGGAACCCCAGTCGGAGGACATCAACACACTGGAGGAGGAGTTCCAGGACATCTGTGTAAAGATAAATGCTGCTAAACAGGACAGCGAAAACGCCAAAATAAAGCTCAATCAGCTAAGAAGAGTATTGGAGGAGGCGGAACAGAACTACAGAAGGCATAAGGAAGAAATTAGTAACATAAAAGAAGAGGCAGATCCAATCAAGGATGAACTCGGTAAAGCTGAACAAGAAGTCGAAAGAAGCAAACACCACGCAAAGCACTATGGCGACAAGCGCAAGGCCCACGTCAACACAATCCAGAGGTTAAAGGCAGACCTGGACTCCAAGGAGACGGAGCTGCAGGCGTCCATCGCGCAGGCCACGGAGATCTGTGCGGAGCGTGTGGAGGTGCGGAGGACGGCCAAGAGCCTCGACAGCGAGATGAATCGCCTGCGGCAGAAAATCACTTCCCAGCAAGACCAGCAGGGCGACCGTGATGAGATCATAAGgCAGTACCAGGAGGcagtaaacaaatataaacatattgcaCTGCAAGTGAAAAACCTAAAACGGTTCATCTCTCTGCTTGGCAAGATCATGAATGACCGACACAAGGCCTACACGGAGATGCGCATGTATCTCTCTGTGCGGTGCAAGTACTACTTCGACTCCCTCCTGTCGCAGCGGGGTTACTCTGGGAAAATGTCCTTTGATCATAAGAATGAGACGCTGTCCATCGCGGTCCAGCCGGGAGAGGGGGACAAGGCGGCCCTGAATGACATGCGCTCGCTGTCTGGTGGGGAGCGCTCCTTCTCCACCGTGTGCTTCGTGCTGTCGCTGTGGGCCATCGCAGAGGCGCCCTTCCGCTGCCTGGACGAGTTCGACGTCTATATGGATATGGTCAATCGCAGAATCTCCATGGACATGATGCTGAAGATTGCAGCGAGCCAACGCTACCGCCAGTTCATCTTCCTCACCCCCCAGAGCATGAGTTCTCTTCCAGACAACGGCTTGATGAGGATCCTGCGACTGAACGACCCAGACCGAGGGCAGACAGCGCTGCCGTTTGGCCGGAGGAACCAGGAAGACGAGGAGAAGTGATGAGGCCTCCGAACATCTGAACGCAACCGGAAGCCTGCACTGTGGTTCTGGGGACTGTACAGAGTTAGCAAAGGAAGGAAAAAGGGGGCGTTAGTtctgaaattgtttttaaatattttgattcggagttaaaatgtatgtacagaaaaaaggtgtatataattgtaatcGAAATTGTTATATTACAGAGATCTCTTTCATGTTCTGAAAGAAAGTATTAgaaataaagtatttgttttagctGTTAATATGTGTTGCTTTGCAGACTGTGGGAGACGGTTGGGTGTCCGTACAGGGAGACCTCTGCCCCGGACCGctacagaatacaaaattagGTGTACGCAGTCGGGGTCCCTCAATACGGGGACCGACCAGAAAGAATAGCTTTAATAATCAACCTATAGATTGTTGACTCGCCGCAGAAAGTGttcattgaattattttcttaaacaaattCTCCACATTTGCCTTGTTCAGCATCCTTACAAAATACGTTACACAAAAGCATATAGGTAtagatttattgttttactcctacttgtttgtttgttggtcaTCAGTGCccattgtatttatatacagtacgtTTAAGTATGTTAACAAAACATGTACTTAAAATAGTCTAAATGccatgaaatgtgtgtgtatccaGCTGCTTCTTCagatttcatattaaaaacattttcggGTTAATCTTAAGCTGATAATACCTTAATCCTAAAATGAATGGCAACAGTAAAATGCAAAGTGTTGAACTTAATGCTACTAAATGCAGTGGAAAATAATTTGTCACACATGTAAAACATTCTACATGCATGCCACAAACACTTTATAAAGCAGTTTAATGTTAACATGTTCACATGCTTTGTATTACTCaagtttaaatgcatgcaaGAAGTTAATCACAAATAGGTATAAActattgcataaaaaaaaaaaaaattcagctGAAGCACTGCAAGTCCAATTATGAGTGACAGAC

Function

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
K22804 SMC6; structural maintenance of chromosomes protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003485 True 4381 mRNA 0.48 27 5379028 5402540

Neighbor

gene id symbol gene type direction distance location
AMCG00003481 NA coding upstream 39181 5335491 ~ 5339847 (+)
AMCG00003478 LOC108428732,LOC107594120,LOC107734000,LOC107552030,LOC106571024,LOC103363535 coding upstream 191755 5175015 ~ 5187273 (+)
AMCG00003475 NA coding upstream 683691 4689484 ~ 4695337 (+)
AMCG00003468 NA coding upstream 835267 4541643 ~ 4543761 (+)
AMCG00003474 NA coding upstream 907297 4471337 ~ 4471731 (+)
AMCG00003487 NA coding downstream 61219 5463759 ~ 5506907 (+)
AMCG00003495 NA coding downstream 349603 5752143 ~ 5753261 (+)
AMCG00003498 NA coding downstream 364818 5767358 ~ 5769937 (+)
AMCG00003497 NA coding downstream 422041 5824581 ~ 5825732 (+)
AMCG00003496 NA coding downstream 511931 5914471 ~ 5915592 (+)
G752 NA non-coding upstream 825383 4552898 ~ 4553645 (+)
G742 NA non-coding upstream 894758 4483890 ~ 4484270 (+)
G690 NA non-coding upstream 999209 4326653 ~ 4379819 (+)
G684 NA non-coding upstream 1004089 4296559 ~ 4374939 (+)
G646 NA non-coding upstream 1288709 4086896 ~ 4090319 (+)
G907 kbtbd11 non-coding downstream 148205 5550745 ~ 5556306 (+)
G908 NA non-coding downstream 155067 5557607 ~ 5558515 (+)
G960 NA non-coding downstream 426919 5829459 ~ 5829745 (+)
G983 NA non-coding downstream 553064 5955604 ~ 5955820 (+)
G990 NA non-coding downstream 583498 5986038 ~ 5986394 (+)
AMCG00003480 NA other upstream 44276 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 856628 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 923886 4452564 ~ 4455142 (+)
G1012 NA other downstream 1085152 6487692 ~ 6494905 (+)
AMCG00003524 rps7,LOC107668222 other downstream 2095500 7498040 ~ 7504015 (+)
AMCG00003534 id2,LOC106566577 other downstream 3246585 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 3497916 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 3673350 9075890 ~ 9106765 (+)

Expression


Co-expression Network