G169316


Basic Information

Item Value
gene id G169316
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 21832029 ~ 21832622 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU229291
TAACTCTTCCCTGCAGTGGTGTGCTCCACATCTATGCTGATACTGCATTTCTACCTTCCCCCAGTTTTCACAATACATTTCCGCACAGGAGTGCTGCTCTGACACCCCATTCATTATGGCCTTAGTCACTAAAACAGAGCGCACTCCAGCACACCTTAAATGAGACACTTCATTAATTTCAGTCCAGATCCACCTACAGAATAGCCCAATGTGGAGGAGAATAGTTGAGATAAGCTGAGAGCAGGCCTGGCCGCTGCAACTCTATTTTAGGCACATGAGCATAGTTAAGAGGAACAGCTGTCGTCACCAGACAAACTCTGAGGAAAAGCCTGTTAAAGAGCTGCAATCCAGACACTTTCATACTGTCACTGTGTATTTTAGGAGGAAACAGGCAGTTTACCTAAAATGTCACCCCACAGACACTGCTGTACAGTGTCAAACAGACtaacagactgtcactttaaatacTAAACTACTTTAAAGAAAATCTAAGGTCCAGAGGATGGTTAAAGAAAAACTTTTCTTATTTAGGCCTTTATGCAGCCTTTTACACTGCATTAACAAATTATTTTGCACCAGCCAGATTTCACTAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229291 True 594 lncRNA 0.42 1 21832029 21832622

Neighbor

gene id symbol gene type direction distance location
LOC103027332 LOC103027332,LOC108270784,LOC107712254,LOC107658208,LOC107597416,LOC108431426 coding downstream 15801 21810980 ~ 21816228 (-)
ska3 NA coding downstream 26048 21797003 ~ 21805981 (-)
LOC103025519 LOC108431431 coding downstream 39555 21786966 ~ 21792474 (-)
lats2 lats2,LOC107569193,LOC107724484,LOC107712271,LOC107658249,LOC107668891 coding downstream 50404 21756360 ~ 21781625 (-)
xpo4 xpo4,LOC107724474,LOC107597380,LOC107712270,LOC107658250,LOC107668883,LOC107569111 coding downstream 83017 21696744 ~ 21749012 (-)
pla1a pla1a coding upstream 7388 21840010 ~ 21854005 (-)
hsd3b1 LOC108431428 coding upstream 21645 21854267 ~ 21859605 (-)
LOC103032289 LOC108431447,LOC108266533,LOC107724495,LOC107668845,LOC107569301,LOC107597372 coding upstream 28383 21861005 ~ 21870405 (-)
hao2 hao2 coding upstream 38168 21870790 ~ 21885674 (-)
wdr3 wdr3,LOC107712260,LOC107658238,LOC107569352,LOC107724477 coding upstream 374935 22207557 ~ 22232004 (-)
G169315 NA non-coding downstream 450 21827448 ~ 21831579 (-)
G169272 sap18,LOC107597378,LOC107668906,LOC107569214 non-coding downstream 36201 21792697 ~ 21795828 (-)
G169240 NA non-coding downstream 146698 21685079 ~ 21685331 (-)
G169239 il17d non-coding downstream 147425 21683939 ~ 21684604 (-)
G169219 zmym2 non-coding downstream 210281 21619653 ~ 21621748 (-)
G169324 NA non-coding upstream 45134 21877756 ~ 21879570 (-)
G169325 NA non-coding upstream 77704 21910326 ~ 21910539 (-)
G169338 NA non-coding upstream 129651 21962273 ~ 21964618 (-)
LOC111194927 NA non-coding upstream 182346 22014968 ~ 22022386 (-)
G169355 NA non-coding upstream 209817 22042439 ~ 22042770 (-)
G169286 NA other downstream 8991 21822713 ~ 21823038 (-)
cryl1 cryl1,LOC107712274,LOC107668879 other downstream 165906 21648617 ~ 21666123 (-)
G169171 mphosph8 other downstream 258619 21565128 ~ 21573410 (-)
LOC103045992 arhgef7a,LOC103045992,LOC108431465,LOC108266998,LOC107712280,LOC107597388,LOC103372297,LOC105913244,LOC107668898 other downstream 330240 21474662 ~ 21501789 (-)
LOC103045487 sox1a,LOC108431466,LOC107569013,LOC107668909,LOC107658211,LOC107597426 other downstream 468780 21351331 ~ 21363249 (-)
man1a2 man1a2,LOC107668846,LOC107658234,LOC107724469 other upstream 505817 22338439 ~ 22476272 (-)
G169567 NA other upstream 1062146 22894768 ~ 22895432 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other upstream 2475028 24307650 ~ 24352908 (-)
LOC111194864 NA other upstream 3669318 25501940 ~ 25509416 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other upstream 3965888 25798510 ~ 25905616 (-)

Expression


Co-expression Network