G169338


Basic Information

Item Value
gene id G169338
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 21962273 ~ 21964618 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU229329
cgtgaacgaactttaagttggcttggaaaagtacgCTAATAACgttgaaaagttaaaatggttgctaagtggttgctaagtggttgctaggcagttgctatcattactaaagtggttgctagcagttgctaggcagttgctaacgttttccaggtggttgctaaggtgttgctaagtggttgctaagcagttgctaggcagttgctaacgtattccacacggttgctaagcagttgctaacgttttccaagtggtggCTAAAGtatagctaactggttgctaggcagttgctatcatttctaaagtggttgctaagcagttgctaggcagttgctaacatattccacatggttgctaacattttccaggtggctgataagatgttgttaagtggttgctaggcagttgctataatttctaaagtggttgctaggcagttgctaacgttttcctagtggttgctaaggtgttgctaagtggttgctaggcagttgctatcattactaaagtggtttctaagtggttgctaggcagttgctaacgttttcctagtggttgctaaggtgttgctaagtggttgctaggcagttgctatcggttctaaagtggttgctaagcagttgctaggcagttgctaacatattccacatggttgctaagtggttgctaggcagttgctaacgttttcctagtggttgctaaggtgttgctaagtggttgctaggcagttgctataatttctaaagtggttgctaagcagttgctaacgttttcctagtggttgctaaggtgttgctaagtggttgctaggcagttgctatcattactaatgtggttgctaagcagttgctaacgttttcctagtggttgctaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229329 True 875 lncRNA 0.43 3 21962273 21964618

Neighbor

gene id symbol gene type direction distance location
hao2 hao2 coding downstream 76599 21870790 ~ 21885674 (-)
LOC103032289 LOC108431447,LOC108266533,LOC107724495,LOC107668845,LOC107569301,LOC107597372 coding downstream 91868 21861005 ~ 21870405 (-)
hsd3b1 LOC108431428 coding downstream 102668 21854267 ~ 21859605 (-)
pla1a pla1a coding downstream 108268 21840010 ~ 21854005 (-)
LOC103027332 LOC103027332,LOC108270784,LOC107712254,LOC107658208,LOC107597416,LOC108431426 coding downstream 146045 21810980 ~ 21816228 (-)
wdr3 wdr3,LOC107712260,LOC107658238,LOC107569352,LOC107724477 coding upstream 242939 22207557 ~ 22232004 (-)
fam46c fam46c,LOC107658236,LOC107597368,LOC107724489,LOC107668849,LOC107569365 coding upstream 351179 22315797 ~ 22320021 (-)
LOC103024581 NA coding upstream 548285 22512903 ~ 22559382 (-)
LOC103024947 LOC108266290,LOC108435066,LOC107714355,LOC107601612,LOC107657493 coding upstream 1130612 23095230 ~ 23566845 (-)
LOC111194931 ttnb,LOC108435066,LOC107714355,LOC107601612,LOC107716993 coding upstream 1276722 23241340 ~ 23300036 (-)
G169325 NA non-coding downstream 51734 21910326 ~ 21910539 (-)
G169324 NA non-coding downstream 82703 21877756 ~ 21879570 (-)
G169316 NA non-coding downstream 129651 21832029 ~ 21832622 (-)
G169315 NA non-coding downstream 130694 21827448 ~ 21831579 (-)
G169272 sap18,LOC107597378,LOC107668906,LOC107569214 non-coding downstream 166445 21792697 ~ 21795828 (-)
LOC111194927 NA non-coding upstream 50350 22014968 ~ 22022386 (-)
G169355 NA non-coding upstream 77821 22042439 ~ 22042770 (-)
G169357 NA non-coding upstream 112743 22077361 ~ 22077585 (-)
G169369 NA non-coding upstream 151170 22115788 ~ 22127931 (-)
G169371 NA non-coding upstream 166932 22131550 ~ 22131797 (-)
G169286 NA other downstream 139235 21822713 ~ 21823038 (-)
cryl1 cryl1,LOC107712274,LOC107668879 other downstream 296150 21648617 ~ 21666123 (-)
G169171 mphosph8 other downstream 388863 21565128 ~ 21573410 (-)
LOC103045992 arhgef7a,LOC103045992,LOC108431465,LOC108266998,LOC107712280,LOC107597388,LOC103372297,LOC105913244,LOC107668898 other downstream 460484 21474662 ~ 21501789 (-)
LOC103045487 sox1a,LOC108431466,LOC107569013,LOC107668909,LOC107658211,LOC107597426 other downstream 599024 21351331 ~ 21363249 (-)
man1a2 man1a2,LOC107668846,LOC107658234,LOC107724469 other upstream 373821 22338439 ~ 22476272 (-)
G169567 NA other upstream 930150 22894768 ~ 22895432 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other upstream 2343032 24307650 ~ 24352908 (-)
LOC111194864 NA other upstream 3537322 25501940 ~ 25509416 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other upstream 3833892 25798510 ~ 25905616 (-)

Expression


Co-expression Network