G169521


Basic Information

Item Value
gene id G169521
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 22739198 ~ 22746506 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU229552
cctaaacctaaacctaaccctaaacataacctaaatcttaacctaaccctaaacataactaAAAATCGAAGGAAATCTCTCctcaaaaccttaaaaaaaaacacagatcccGAATGTGTCATCAAACCGAACTCTGTATTACCAAAGGGTCATTAAGGATATTTCTCCATAAAACctgaaaagaattaaaaaatacttatcTGGGGAATCACAGCCTTAATccaaacctaaaatctaaaaagaGGAATAAATATTCCCTTTAAAAATCCACTCCCCCTTGGGAATTGACTTAactgaacatttaaaattaaacaaggGGCGGAGCCTGTTCCTGGAAGCCTATATAAGCAGCAGGACAGGGGAAACCATTTTAGAGCTGGAACTGAGGCAAGTCTGTGCCTGATGAAGGATCATTCTCTTCCGAAAGgtatttttaatatcaatttttattttagaaatactttttaatacatacaatttaatattgcttaattaaaccttttaattgtttaataaatgtctttctactttataataattagaatatgATACGATATTAAAACATCAATTAAAGATACATTCACCTTACTATGACCTTAGGGCTCTTACTTTAATTGAAGGATAGGACACAAGCCTAGGAATGATCAACCTAAGGCGGGCCACCTCAGACGAGGGTGTATAGTGTTTAAAAGGCCGAAACACCCTATGACTCTGAGGCACACTACTGATGATGTGtccttaaattacttaaataacaGATCCCATTTGGACTTCCTGTTATAATAATACTAATCATGTAAATTATTTcaagtagtaataataaaaaaataaaaaaataaaaaaataattataaaataccaaaactattttaaacaaaacctTAGGGACCTAATACTCAATTAAAATGTCTTCACACCCATTCGCTCCCTAGTTAAACAATAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaaatttagaGACCTAGCACTCGGACGAAGTAGGATTAAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaaatttagaGACCTAGCACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAATACTCATGTAAATATGTCTTCACACCCATTCGCTCCCTAGTTAAACATTAACTTTAGGGAGAGGGAATGGGTGAGCTAGAAAGGCCAAGACGGTCTAGAGGGTGCCCTGCTCAGTCTAGTGGCGCACTCCTCACTATGCTCCCTGTGacctcacatttaaaataaacaactttaGAGACTTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229552 True 3951 lncRNA 0.42 3 22739198 22746506

Neighbor

gene id symbol gene type direction distance location
LOC103024581 NA coding downstream 179816 22512903 ~ 22559382 (-)
fam46c fam46c,LOC107658236,LOC107597368,LOC107724489,LOC107668849,LOC107569365 coding downstream 419177 22315797 ~ 22320021 (-)
wdr3 wdr3,LOC107712260,LOC107658238,LOC107569352,LOC107724477 coding downstream 507194 22207557 ~ 22232004 (-)
hao2 hao2 coding downstream 853524 21870790 ~ 21885674 (-)
LOC103032289 LOC108431447,LOC108266533,LOC107724495,LOC107668845,LOC107569301,LOC107597372 coding downstream 868793 21861005 ~ 21870405 (-)
LOC103024947 LOC108266290,LOC108435066,LOC107714355,LOC107601612,LOC107657493 coding upstream 348724 23095230 ~ 23566845 (-)
LOC111194931 ttnb,LOC108435066,LOC107714355,LOC107601612,LOC107716993 coding upstream 494834 23241340 ~ 23300036 (-)
LOC103024627 ttn,LOC108435065,LOC107657509,LOC107714399 coding upstream 567210 23313716 ~ 23465516 (-)
arhgap15 arhgap15 coding upstream 1364227 24110733 ~ 24198957 (-)
LOC111188175 NA coding upstream 2730421 25476927 ~ 25489657 (-)
G169487 NA non-coding downstream 65731 22673136 ~ 22673467 (-)
G169470 NA non-coding downstream 162409 22573962 ~ 22576789 (-)
G169440 parp14,LOC107725230,LOC107695575,LOC107555066 non-coding downstream 231764 22505329 ~ 22507434 (-)
LOC111194929 NA non-coding downstream 458549 22276323 ~ 22280649 (-)
G169409 gdap2,LOC107569935,LOC107724478,LOC107658195,LOC107668848 non-coding downstream 496507 22236616 ~ 22242691 (-)
G169537 NA non-coding upstream 65960 22812466 ~ 22812782 (-)
G169542 NA non-coding upstream 92079 22838585 ~ 22839407 (-)
G169544 col5a2,LOC108435067,LOC108266478 non-coding upstream 104261 22850767 ~ 22853347 (-)
G169565 NA non-coding upstream 129061 22875567 ~ 22876942 (-)
G169562 NA non-coding upstream 131842 22878348 ~ 22879682 (-)
man1a2 man1a2,LOC107668846,LOC107658234,LOC107724469 other downstream 262926 22338439 ~ 22476272 (-)
G169286 NA other downstream 916160 21822713 ~ 21823038 (-)
cryl1 cryl1,LOC107712274,LOC107668879 other downstream 1073075 21648617 ~ 21666123 (-)
G169171 mphosph8 other downstream 1165788 21565128 ~ 21573410 (-)
LOC103045992 arhgef7a,LOC103045992,LOC108431465,LOC108266998,LOC107712280,LOC107597388,LOC103372297,LOC105913244,LOC107668898 other downstream 1237409 21474662 ~ 21501789 (-)
G169567 NA other upstream 148262 22894768 ~ 22895432 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other upstream 1561144 24307650 ~ 24352908 (-)
LOC111194864 NA other upstream 2755434 25501940 ~ 25509416 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other upstream 3052004 25798510 ~ 25905616 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other upstream 3479951 26226457 ~ 26252266 (-)

Expression


Co-expression Network