RNA id: XM_043258843.1


Basic Information

Item Value
RNA id XM_043258843.1
length 6388
RNA type mRNA
GC content 0.50
exon number 31
gene id hip1
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10117804 ~ 10159488 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCGTATTGACATTAACCTCCACGCGCACGGCGATTCCCGCAGTGAGCTACCCGTTCAGCGAATCTGCGCGTGCCACAAGGACGCGTTTCGCCCTGCGGCGGGTCTCGCGTCCGTTGCAGTCGGGAGTTTTAGTGCAGTTTGGTTTCCCTCCGAAGCCTCCGCGCTATCCTCGTCTCCCTGCGCGCGAGAGACGCCGCGTCGCACCTCGCAACACAaacgtttcgtttttttttttttttttttttaagtgatgtAATATTTGACAGAATTTTGCTCTCGTTCtgcttttgtcctttttaaGTCAAAAGCCGCGGCGAATGACACCGATGCGCGAAgaactcctcctcctccagacTCTATTCCGTGGACCGTACCTGTCGCGCAGCGTTTAGTCAAGCGACTCCATTAAACGTTTACGACCCGCGTTCTTCAGGCGGTGGCTTTTCCGGAGCGTCCTCGGGAGTCTGGCGCGCGAGGAGAACGAGGGGGAAACGAGAGAACGGAACgggaaagagaaggagagaggggCTGCTCGAAACTGAACCGGACACATGTTGAGTTAACGGAGCGTTCCCGCTCCCTCCGCCTCCCTCGGCGGATTCGCAGTCTGCTTTTGATTCCCGAGCAGGGAACCGGTTCGGCTTCGCCTCCGTAACCCCGTCTGAACTATGGACTCGAATAAAATGGCAGTGAGCATCAATAAAGCCATCAACACACAGGAGATCGCTGTCAAAGAGAAGCATGCCAGGACCTGCATATTGGGCACGCATCATGAGAAGGGGGCTCACACGTTCTGGCTTGCTGTCAACCGCCTGCCCCTCTCCAGCAATGCAGTGCTCTGTTGGAAATTTTGCCACGTCTTCCACAAGCTGCTGAGGGACGGCCATCCAAACGTCATCAAGGACTCGATGCGGCACAAGGCTGACCTGAACGACATGAGCAGGATGTGGGGTCATCTGAGTGAAGGCTACGGCAAGTTGTGCAGCATCTACCTCAAACTGCTCATCACCAAAATGGAGTTTCACATCAAAAATCCCCGTTTCCCTGGCAACCTTCAAATGTCAAACAGACAGCTTGATGAGGCGGGTGAGAACGACGTCAATAATTTCTTCCAGTTGACGGTGGAGATGTTTGATTACTTGGAGTGCGAGCTGAACCTTTTCTTAGGCGTGTTCAGCTCGTTGGATATGTCTCGCTCCGTGTCGGTGACGGCAGCCGGTCAGTGTCGTCTGGCTCCTCTTATCCAGGTCATTCTGGACTCTAGTCATTTGTACGACTACACGGTCAAACTGCTCTTCAAACTCCACTCCTGTCTGCCAGCGGATACTCTGCAGGGCCACAGGGATCGCTTCCAGGAGCAGTTTAAGAAGCTGAAGAGTCTGTTCTACCGCTCCAGTAACCTGCAGTATTTCAAGAGACTGATTCAGATCCCACAACTTCCTGAGAATCCGCCAAACTTCCTGCGGGCGTCAGCCCTCTCCGAACACATCAGTCCAGTGGTGGTGATTCCGGTGGAGTCTTCTTCCCCTGAGAGTGAACATGTAGTAGAGACAGAAGACCTGGTGGACACAGACATCCCACCTTTACCTaGCGCTGTGGATAGCAAGTTCGACGACCTATTTGGCACCTCAGCTGCTACAGACCCGTTTAACTTCAACAGTCAGAACGGCATGCGTAAAGATGAAAAAGACCGTTTGATTGAGCAGCTCACAGCGGAGCTACAGGCGCTGAAAGAGGAGCTGGAGTCCTTCAGATTGGAGAGTGGCCGTCTTTGTCAAGCACTACGAGGGCGTGTGAATGAGCTGGAGGCGGAGCTTGCGGAGCAGACTCACCTGAAGCAGCAGGCATTGGGTGAGAGCGAGTTCCTGAGGGCGGAGCTAGACGACCTACGCAGGGTCAAAGAGGACACCGAGAAAGAGCAGCGCAGCCTGAGCGAAATCGAGAgaAAAGCACAAGCTAATGAGCAACGCTACACCAAGTTAAAGGAGAAATACACAGAGCTAGTCCAGAGCCACGCTGACCTGCTGAGGAAGAATGCTGAGGTGACTCGTCAGATGACGGTGGCCCGTGCCGCTCAGGATGAGGTGGAGAATGTGAAAAAAGAGATGCAGGACAGATTGAAAGCCGCTCAGGATACTGCCAGTCAGCAGGAGAAGGCTCAGTTAGAGCAGCTTCAAGCTCTACAAGCCGAGCTCATGTCCAGCAGATCTGAACTAGAGACCCTGAAGAGCACCGTCACCTCCTCCCAACAGTCAAACGAGCAGCTCAATACTCAGATGTCCGCTCTGGAGGCTGAGAAGGTGGGGCTTATGGAGACCGTATCTCAGAAGGAGGCGGAGGTAGCCAGTTTGGGGGAGGAGTTAGAGCGCGTGCAAAGCAGTCTGACCAACGAGAGGGAGAGTGGCGTGAAAGCCGCTGAGGCCCTGCAAAACCAACTCAATGAGAAGGAGAGTCGCGAGCAGGCTCTGGAGAGCGAGCTGGTGTCTCTGCGCTGGGCGGCTCTGCGGGCTTCACTGGAGGAGGCAGGGAGGATTGTACAGGACAGCTTGAATCAGCTCGATGACCCCGCTCACATCAGCTGCACCAGTTCAGCCGATTACCTGGTGTCCAGGTGCCAGGTGGCTCTGGACTGCGTGGAGAGACTGCAGTCGGCCAGAGACGGCTTTGTATCAGATAACACAGATGTGTCTGGACTGGTGCGGGCGGTGACTCAGTTCGCTCACCTGCTGGGAGACGTCATCATGCAGGGCAGTGCCACCTCACACATGGTGCCGGTGGAGCAAGCTGACGCGTTGGCAGACGACGTGAAGGCGTGCGGCGCGGAGGCCCTGGCGTTGCTCTGCCAGCTCAAGGAGCAGAAGTCTATGGAGACGGCAGACTGCAGCAGGCTGAGGGCGGCACTGGATACCGTCATGGCCTTGGGCGAGAAGTTGCGTCCTCGGGGTCTAGAACTGCAGCAAGGGGAGCTGGGAGATCTTGTGGAGCAGGAGATGGCAGCCACATCGGCAGCAGTGGAGTCAGCCGCCGCCAGGATCGAGGAAATGCTCAATAAGTCCAGGGCGGTTGACACTGGAATCAAAATGGAAGTCAATGAAAGGATCTTGGCGTCCTGCACAGATCTCATGCAGGCCATCAAAGTGCTAGTGCTGTCCTCCAAAGACCTGCAGAGGGACATTGTGGAGAGCGGCAGGGGGGCCGCATCTATGAAGGAGTTCTACGCCAAGAATTCCCGTTGGACAGAAGGGCTCATTTCCGCCTCCAAGGCCGTGGGCTGGGGTGCCACTATGTTGGTTGATGCAGCTGATCAGGTGGTGCAAGGCAAGGGCAAGTTTGAGGAGCTGATGGTGTGTTCGCGCGAGATCGCCGCTAGCACGGCTCAGCTGGTCGCAGCTTCTAAGGTCAAAGCAGACAAGGACAGTTCGAACCTTTCCCGTCTCCAGCAGGCCTCTAAAGGGGTCACCCAGGCCACGGCAGGGGTCGTGGCATCAACCAAGTCTGGCAAGTCTCAGATCGAGGAAACGGAAACGATGGACTTTTCCGCGATGACCCTCACCCAGATCAAGAGGCAGGAGATGGACGCGCAGGTGCTGGTGCTGGAGCTGGAGACTCGTCTGCAGAAAGAGCGGGAGCGACTGGGCGAGCTGAGGAAGAAGCATTACGAGCTCGCTGGCGTCGCAGAGGGAtggggaggagaggaggaggGAACGGGTTGAGACTCGTCGCGTTCTGTGCCGCAGACGGGCCGCTTGGCgtctttatacacacacaatatcttTCCCCTCTCcctttttattgtactttttaacTCTTCGATTTCTTTATTGTACATTAAAGCCAAATAAAAGGTGCTTTTTTTTCTAACCTGCTCCCTCCTCCCCTGCCCGTGGAGTCTGGAGACGCGAGGATGGGGAAGGAAGCGGGTGGCACACCTAGTGGACAGAGAGGGAAGTGCAGGCTCGCTGAACCGTCGGAGTATTTCGTGTCCTCTTCCTCCTCGTACGGAGCGGGGGTCTTTCCCGTCAAACATCCCATGACGCATTGCACAAGGGTGAGTCGCCCCCCCGTTTCGCTGTGCTGCGATTCTTCCCGGACTCGACTTTtacaaacagcagcagcagcgtgcGACTTCCGTTTCTTAAAGGCATTCCTTAACGTCGCGTAGGATCAGCCCTCGCCTGGGTCCGTCCTTCCCTAGTCCCCTAGCAGTGGTCACTGGACTAAAACGAGTAAGAGATGATGACCTACTGCGGACTAACACCTGAAACACTAGAAAACTCaactctgtattttttttttatgttaagcTTTATGTTCCCAAGGCACTCGTTTTATAAGAACACCCTTAATAGATTTAATCCACTGGCTTTTTACTGTTCCACCGTGTTGACTTATAGGGACAAACTTAGCCCATTTCACCAGTTTCAAGTCCATGACTGAATATGAACTGACTGTTTTTTGTGAGACCTCGAGCtcatgctttttgttttctagCTCTATTTAGGTCCTTGTTTCATCGGCACCGATAGCACGGCACCATATTGTATTAGTGACGGTCCCGTGCGGTTTACACACCGTTAACACGACAGCATCCGTTAATTCCCGTTGTCTTCTTCCAGCTCCACACACGCGCACACCTTCACACCGAGGCGAGGAGAGACGCCCCGTGCCTTCCAAAAGGGAAAAAGGGTCACATTCCCTCACAAagacctttaaaaacaaataaaaaaaaaatcgtgatCTGAGTAGCATTAGGACAGTGTTTTAAATTTGTAGTTTGGTGTTGCGAACTGAGATCATGAAACCTTGTAGAGCGTGGCGTGAGGACAGATGTAGCCATCCATCGCTGTGTTCAACTCTGGTGCGTTTCGTTTGGAATTTCGagcttcctttttaaaaaaaaatggtacgGAGCCCCTAAGGGGACACGGTGATGGAAATTACATTTCGTTGTTCTGTCTTAAAAAAAACGGTGGAAATCTACTGGGAGAATGAAACATGAACGGAAACCGTTTTTTCTTCCACCTCAGGTTATTCCCATCGCAACGCAGATGTAAACGTTTCCCTGGAAATGCGTTTTTGCGTTTTTCCTTTTCAAGGGAATCGAGAGGTTTTTCTCAAGGGAGCGCTTTCTAGGAAACTCAGGTTTGCGAGACGTTTCTCGAGGAACGCTGGTTTTGCGATCGGTCGCTAATATGTCGAAGGaacggaaaaaaaataaaaattaaatgttgtaaGCGTACGCAAAGTTTCTTgagaaaaatgatttgtttttgcgagcaaaagtgttttttaggCAACGCTAAAACAATTCCTTCCATCTTTTTTTCCATCACGGTCTCTTTTTAGGAGCTCTGTAAAACGGTCAAAATCGGTTTTcaattattttgcttaaaaaaaaattaagtctcTTTTagaattgtgtatatatttctcatcatatacagtacaaatattACCGCGATGTATAGCCATTTACAAGTGTACTTTACCATTTAAATtctatagttttatttatagtaattcACATTAATTTAACGGAGAGTTGTTTAATGGGCTTAATTTTCTTTAGGCAAAATAGCATTCATTTTGGgggaatttttttgtttatttttattattattattattttttttttacatttcccgACTGTTTTCATGACATTCACACAAAATGGAGATACATGGGGAATGTTAAGTCAATTGAACTGGGTTCAGGAGGTCTGTCCACTTCTGTCAAAGCAATGTAGACCACATAGCCTTGTAGACCGCCACTGTCTGCCAGCAGCACAGCTCTCACCAGAGCTCACAGGGACTTGCAGTCTTGTAGTCATCTACAAACCAGGGTTACCTCAACTTCTCCACAAACTACCAGTCAGTAACTACAAAGAGGAAATGATTGAGTTTAAGGGTCCTGTAGACTCGATACGAACATGCGTTGGCTAAAACcatgagtgtgtgcgtgcgtgtgtgttcttGAATActaatataatgtgtgtgtgtttgggtggaTGCTGAGATAtgatatatatactgtatatcccTTATGTTGTTATGTCTTAATACCCTCATATTGTTTCACTTGTTGCACTGCTTTGGCTGTTATGTTAAGTTGCGACACTGGGTATTtaatttccaatttttttttttttttttccggagTGTCATCATCTCCTCCGATAATGGTTTATTTCACCGTTTAGATTCGGTTGTCTAGTCTTACCAGCTCAGCCAGCCTCTAAACTGCCTCTCACTTTTGTTAACGGAGAAACGAAAACAATTCCGCTCAGTaacattttggagaatatctttgtatgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0001878 response to yeast biological_process
GO:0009790 embryo development biological_process
GO:0005543 phospholipid binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K04559 HIP1; huntingtin interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155535 lncRNA downstream 4784 10112785 ~ 10113020 (-) True G105329
TU155526 lncRNA downstream 23814 10086832 ~ 10093990 (-) True G105321
XR_006252698.1 lncRNA downstream 326629 9780732 ~ 9791175 (-) True LOC122359357
TU155459 lncRNA downstream 367315 9749836 ~ 9750489 (-) True G105279
TU155457 lncRNA downstream 379161 9733946 ~ 9738643 (-) True G105278
TU155556 lncRNA upstream 21546 10173478 ~ 10175599 (-) True G105339
TU155585 lncRNA upstream 92016 10243948 ~ 10249609 (-) True G105361
TU155586 lncRNA upstream 93532 10245464 ~ 10251995 (-) True G105362
TU155587 lncRNA upstream 97876 10249808 ~ 10250125 (-) True G105363
XR_006252600.1 lncRNA upstream 117272 10269204 ~ 10269968 (-) True LOC122358386
XM_043259756.1 mRNA downstream 32136 10081909 ~ 10085668 (-) True tmem120ab
XM_043259755.1 mRNA downstream 36076 10034152 ~ 10081728 (-) True tyw1
XM_043259498.1 mRNA downstream 93519 9967851 ~ 10024285 (-) True caln1
XM_043259497.1 mRNA downstream 95198 9967851 ~ 10022606 (-) False caln1
XM_043259580.1 mRNA downstream 191510 9919504 ~ 9926294 (-) True fam222bb
XM_043258387.1 mRNA upstream 12777 10164709 ~ 10177026 (-) False lgals17
XM_043258388.1 mRNA upstream 12777 10164709 ~ 10174788 (-) True lgals17
XM_043258392.1 mRNA upstream 12777 10164709 ~ 10172735 (-) False lgals17
XM_043258386.1 mRNA upstream 12777 10164709 ~ 10172642 (-) False lgals17
XM_043258389.1 mRNA upstream 12777 10164709 ~ 10172502 (-) False lgals17
TU155454 other downstream 320914 9763871 ~ 9796890 (-) True dynll2a
TU155453 other downstream 320914 9793748 ~ 9796890 (-) False dynll2a
TU155158 other downstream 562017 9552634 ~ 9555787 (-) True G105059
TU155103 other downstream 681007 9434426 ~ 9436797 (-) True G105022
unassigned_transcript_2150 other upstream 51395 10203327 ~ 10203413 (-) True trnastop-uca
TU155809 other upstream 361262 10513194 ~ 10514062 (-) False atf5b
TU155899 other upstream 507005 10658937 ~ 10661150 (-) False cryaba
TU156055 other upstream 933887 11085819 ~ 11092713 (-) False igsf9ba
TU156117 other upstream 1151489 11303421 ~ 11304562 (-) False LOC122358622

Expression Profile