RNA id: XM_043258387.1


Basic Information

Item Value
RNA id XM_043258387.1
length 1414
RNA type mRNA
GC content 0.51
exon number 6
gene id lgals17
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10164709 ~ 10177026 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATATAGTGAACGAAACTTGACTTCGGGCAGAAGAACCCGCTCGCATCGAACATTTCTGCTTCGGAATATTTCTAAACTTTAGACTAAAGTCAACATAACTAACATGACAATCGTACCTTCAACGTCACAACGCCAACTTATTTTAGAGACAAAAAATAGCTCAGAAACTAATTTTGACTGACTAAAGTTTAGAAATATTCCGAAGCAACTGCAATGCGAGCGGTTTCTTCTGCCCGAAGTCAAGTTTCGTTTTTGAGAAACAGAGACGGGTCGGCTATATATTCACAGCCGATCTCTTTAACCCGATCAACATCCCCGAAGCGGTCGGAGCTGAAGCTACTGCGATATGGGCGGGTGTAACCGGATTTCAACCGTTCTGATGCTGTGGCTTCTTATTTGTGTCGGCTCCTCTCCCGTCTCGGCGGTCGTCCACACGTCTTCAAGGGTCGGCCTGGCCGCCGTCCTGCCCTGCTCTGTGGAGTCACTCCTGGAGCCGGAGCACACCTTTCACATACAGTGGGAGACCGTAAGCAATGCGGTTTTTGAGCGCATGGGACAGGAGCGGTTTCAGGGGGAGGCCTACAGAGACCGGGCGGATGTCCCGGAGGAGCAGCTCGTGAGGGGAGACTGCTCTCTGTTCCTGCGGGATGTCAGATTCAGCGACGCGGGCGTCTACGAGAGTTACTTGGTGGTCGGCCAGTCGAGTATCAAGAACCGAGTTTTCATTCAGCGCGTCCAACTTGCTGTTACCGATCACAAGGACATCAAATCAGTGCGGACGGGGGAAGAACTGATCCTGGATCTGCACACACATCAAGCTGAGCAAGTGATTTTTCAAAAAAGCAATGACACCGACTGGACCGTCCTGTGGCAAAAACATGCagtcaaacacaaaaaaggtCATCTGATAAAGAGAGGAAACGAGTTGATTCTCAGTAATGTTACGGCCCGCAGCGTCGGAACATACAAAGTCCTTGACTCAGAGGGGTTGGCTCTCAGCACAATAAAGGTCACCGTTATAGaACCCGTGTTACCCAGAGAAACAGAAACTCAGCAAATACAGTCTGCATTAGGTAAGAACTGCTCCAGGAGAGTCTCAGATGTGCTCAGTGCCGTGTCCATGCTGCTGCTCATGAGTCTGACCACCCTGCTCTCCATCACCGTCTGGACCCCGCCGCTCACCGCCGTCCTGGTCTTCTCCACGCTGTCCTGCACGGCTCCCCGCGTCCTGTCCGTCACTTCACTGATGGTGGAGGACACGGACTCCTTGGCACCGTTCATGGTGCCGCTGACGGCTTCCTTGGCTCCTGTCACTGCCTCTTTAGCACTGGCGACGatctgaaagagaaaaacaccaTTACAGCAGTGCCTCAAATGATTAAATCGCATCCGAAATAAAGGTTTcgtttacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155535 lncRNA downstream 51689 10112785 ~ 10113020 (-) True G105329
TU155526 lncRNA downstream 70719 10086832 ~ 10093990 (-) True G105321
XR_006252698.1 lncRNA downstream 373534 9780732 ~ 9791175 (-) True LOC122359357
TU155459 lncRNA downstream 414220 9749836 ~ 9750489 (-) True G105279
TU155457 lncRNA downstream 426066 9733946 ~ 9738643 (-) True G105278
TU155585 lncRNA upstream 66922 10243948 ~ 10249609 (-) True G105361
TU155586 lncRNA upstream 68438 10245464 ~ 10251995 (-) True G105362
TU155587 lncRNA upstream 72782 10249808 ~ 10250125 (-) True G105363
XR_006252600.1 lncRNA upstream 92178 10269204 ~ 10269968 (-) True LOC122358386
XR_006252621.1 lncRNA upstream 106996 10284022 ~ 10284472 (-) True LOC122358536
XM_043258842.1 mRNA downstream 5221 10117804 ~ 10159488 (-) False hip1
XM_043258843.1 mRNA downstream 12777 10117804 ~ 10151932 (-) True hip1
XM_043259756.1 mRNA downstream 79041 10081909 ~ 10085668 (-) True tmem120ab
XM_043259755.1 mRNA downstream 82981 10034152 ~ 10081728 (-) True tyw1
XM_043259498.1 mRNA downstream 140424 9967851 ~ 10024285 (-) True caln1
XM_043258991.1 mRNA upstream 11697 10188723 ~ 10190098 (-) True mos
XM_043258148.1 mRNA upstream 23450 10200476 ~ 10203182 (-) True mrpl28
XM_043258144.1 mRNA upstream 27679 10204705 ~ 10214604 (-) True cul5a
XM_043259788.1 mRNA upstream 38837 10215863 ~ 10227750 (-) True itgae.2
XM_043258487.1 mRNA upstream 75566 10252592 ~ 10254569 (-) True LOC122358604
TU155454 other downstream 367819 9763871 ~ 9796890 (-) True dynll2a
TU155453 other downstream 367819 9793748 ~ 9796890 (-) False dynll2a
TU155158 other downstream 608922 9552634 ~ 9555787 (-) True G105059
TU155103 other downstream 727912 9434426 ~ 9436797 (-) True G105022
unassigned_transcript_2150 other upstream 26301 10203327 ~ 10203413 (-) True trnastop-uca
TU155809 other upstream 336168 10513194 ~ 10514062 (-) False atf5b
TU155899 other upstream 481911 10658937 ~ 10661150 (-) False cryaba
TU156055 other upstream 908793 11085819 ~ 11092713 (-) False igsf9ba
TU156117 other upstream 1126395 11303421 ~ 11304562 (-) False LOC122358622

Expression Profile