RNA id: XM_043258144.1


Basic Information

Item Value
RNA id XM_043258144.1
length 4969
RNA type mRNA
GC content 0.44
exon number 19
gene id cul5a
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10204705 ~ 10214604 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGGAGATCCCATCACCAGTTCTAATACCGAACCAAATCTCGCGAGAACGGACGAGGGGATAAGTTAAGGAAACATGGCGATGTCTAATTTGTTAAAGAACAAGGGTTCCCTCCAGTTTGAGGACAAGTGGGATCTAATGCGCCCCATTGTCCTCAAGTTGCTTCGCCAAGAGTCCGTAACAAAGCAGCAGTGGTTTGATCTTTTCTCAGATGTTCATGCAGTTTGTCTATGGGATGACAAGGGACCCGCAAAGATCCACCAGGCCCTCAAGGAGGACATCttagattttattaaacaagCCCAAGCGCGAGTGCTCAGTCACCAAGATGACACGGCGCTCCTCAAGGCTTACATCGTGGAGTGGAGGAAGTTCTTCACACAGTGTGACATCCTGCCCAAGCCGTTCTGCCAGCTGGAGATCACCCTGATGGGCAAACAGGGCAGCAACAAGAAGTCCAATGTGGAGGACAGCATCGTCAGGAAGTTGATGCTGGATACTTGGAATGAATCTATATTCTCCAACATCAAGAATAGATTGCAGGATAGCGCGATGAAGTTAGTCCACGCTGAACGGCTGGGAGAAGCGTTCGACTCGCAGCTGGTCATCGGAGTCAGAGAGTCTTACGTGAACCTGTGCTCCAATCCCGATGATAAGCTGCAGATATACAGGGATAACTTTGAAAAAGCCTACTTAGACTCCACTGAGAGGTTCTACAGGACCCAGGCGCCTTCTTACCTGCAGCAGAATGGAGTACAAAACTACATGAAATATGCAGACGCTAAATTAAGAGAAGAGGAAAAACGTGCACTACGGTATTTAGAGACGAGACGTGAATGTAACTCTGTACAAGCACTTATGGAATGTTGTGTGAATGCACTGGTAACGTCCTTTAAAGAAACTATCTTGGCTGAATGTCCAGGCATGATCAAACGAAATGAGACTGACAAGCTGCACCTTATGTTCTCTCTCATGGATAAAGTGCCCAATGGGATTGAACCCATGCTGAAAGACCTGGAGGAGCACATCATCAGTGCTGGACTGGCAGACATGGTGGCCGCTGCCGAGACCATTACAACTGACTCTGAGAAATACGTGGAGCAGCTCCTGACTCTATTCAATCGATTTAGTAAATTAGTGAAGGAAGCATTCCAGGATGATCCTCGGTTCCTTACAGCCAGAGACAAAGCATACAAAGCAGTTGTGAATGATGCCACAATATTTAAGTTGGAGCTGCCAATGAAACAGAAGGGAGTGGGCCTTAAAACACAGCCAGAATCAAAATGTCCAGAGCTGCTCGCAAATTATTGTGACATGCTGCTAAGAAAAACGCCACTCAGCAAAAAGCTAACCTCGGAGGAGATCGAGCTCAAACTGAAGGAAGTGcTACTTGTGCTAAAATACGTCCAGAATAAGGATGTGTTCATGAGGTACCACAAAGCCCATCTGACCAGACGTCTGATCCTGGACATCTCAGCGGACAGTGAGATAGAGGAGAACATGGTTGAGTGGCTCAGGGAAGTTGGGATGCCTGCTGACTATGTGAACAAGCTAGCTAGAATGTTCCAGGACATCAAAGTGTCCGAAGATCTTAACCAGGTTTTCAAggaaatgcacaaacacaacaaGCTAGCTTTACCAGCGGACTCTGTGAACATAAAGATCTTGAATGCTGGAGCGTGGTCACGCAGCTCAGAGAAAGTGTTTGTATCTCTGCCCACCGAGCTGGAAGACCTCATTCCAGAGGTGGAGGACTTCTACAAGAAGAACCACAGCGGCCGCAAACTCCACTGGCACCACCTCATGTCCAATGGCATTATCACTTTTAAGAATGAAGTAGGGCAGTACGACCTGGAGGTCACCACCTTTCAGCTGGCTGTACTTTTTGCCTGGAACCAAAGACCACGAGAGAAGATCAGCTTTGAGAATCTGAAACTTGCCACTGAGCTGCCTGACGCTGAACTGAGACGTACTCTCTGGTCCCTCGTTGCCTTCCCAAAGCTCAAACGCCAAGTGCTGTTATATGAACCTCAAGTGAGCTCTCCCAAAGACTTCACAGACAGTACATTGTTTTTCGTTAACCAGGAATTCTCCTTGATAAAAAACGCCAAGGTTCaaaagaggggaaaaataaACCTAATTGGTCGATTACAGCTGACGACGGAGCGAATGAGAGAAGAGGAGAACGAAGGCATCGTCCAGCTTAGAATATTAAGAACACAGGAGGCCATCATTCAGATAATGAAGATGCGTAAGAAGATAACAAACGCTCAGCTGCAGACCGAGCTGGTGGAGATCCTGAAGAACATGTTCCTCCCTCAGAAGAAAATGATCAAGGAACAGATCGAGTGGCTCATTGAGCACAAGTACATCAAGAGAGACGAGACGGACATTAACACCTTCATCTACATGGCGTAACGTGGAAGCGACTCCGGAGATGATCCGTGACCGTTCTTGGAGGACGGCGTACCCGTCGAGGATCAGCAGCGGGGGAGGGATGGTGATGTCTCGAAGATACTGCTTAGGCTGCTGGTCTGGCGGCGTAGTCATGAGCTTGTTTTAACGACAGACAGTCAcacatcagtaaaaaaaaaatgtatttaaaaaaaataataaatcccTGCCTTACCTTACAGTGAAGACACATGGGATGAGGATaggagattaaaaaaataggaaaaaagacaaaaaggattCTATTTTTGCCATTGGTAGTCAGTATGCATGGTGGGGCGGTTTGCCTTTTGTATGTGTACATCTCCAGCAGCATGCGGTCAGTGGGATTGCCACATTCATCCCAGGACTTGTTTGTGTGTGCCGTGTTAcgagtgtttttttccccttcctaCATCCTCCATATGGACCTCACCGCGGCCCATCCTCAGCACGCAACCCAGGGCAAGAGCCGTCCCACCGTCACAAACACCTGGCCTTGCACGACGACACCGGAGTTTctgaggagccagggaggactAGCATTAGCACTTTTCACACTTTCCACCACAATGTGTCAGCATGGCTTTAATTGGGTTGGTTTTCACGTCTTCCTGTTTCGTTTAAGACTTTTTTTCGCAAATGAAAGATTTGACCGGCTGATAGCAGTTTAGACAACATATTAGACATTCAGATGTCACGAAGGGTCAAGGTCTGTGGAGAAAATCTATCGGTTTGCGatggttttctttttgtgtACATGCATTAATTGCTGCGCACCAAGTCGGAAGGTCAGTGTAAcagttgcagttttttttctttcctatttactacactttttttctgttattggTCTATAAATAGCGACCGAGTAGTTGATGAGGTGGCCCAACTGTGGTCCTGTAACATGTAGCCTACTCATCGAACCTGTTGAATTTTATCCACAACCCCGGTTTATTGTCATCGCCCAATCACGGCTGAGCGTAAACAAGCGGTAAAGCACAGTTACAGGAGTCCAAGTAAAGCAAGCACTGCTCCGACCTCAGGTAAAGTAGGGCAGAGTTAAAAGTAGGTTGTGCTAACTTTAATTAGCACCTCGCGGTTCTCGTTAATCACACATTGCCAAAGCAAAGCACAAAAGAGTGCTGATCTCAAAATCAAACAGTGTAGGATCTATTACAGTTATTGTTTTCCCTTTATTTCCGACGTCGTAGCCACATTTAGTGGAAAACAGGAAGTTTGGGCTTTTTTTTGACTCATTGTTACCCTATTATGACTGAGTATCTACGAACAAAAGCTTGTGCAATCACTGATCAGCTGTTTATCATAATCAAACGAACTGTTAGCAtttaaataagtacaaaataagTATTATCTCATTTTCAAGGCAGATTTCCTGTAGCGATAGTGTCTGGACGGTCTTAAGATGTAGGTTTGGAGTGACGGTTGAATCAAACCCCAGTCTGTTTACTATATATCAGCCTGCCAGTGTGCCCTcaataaaaattaacaacaaaaatatcattttttttttcttactggcTGATAATATCTAGGTTTGATTGTACATTCATATCCAAACCCGAAACACTCAATCCAATAATAAGAACACGATGACGTCCCAATGAAATAATCATGGAAATTTCTGTAACGTTTCTGCAGTTCAGCTGTCCATCTCCACTATACACCCTTTTCTGtcaattctgtttgtttttgtctgtttcaaTGCGAGGCAGTCACTCATTTGTACCCCCAGTGTTTGATTTCACATAATAACGCAAAGGCTCCCTTCAACTGTACTGAAAAGCAGTTCTTTATAAGATCCAGATGTACAACAGTGTTTGAGAACATTGTGTTATTTGATTGTccactttatttattgataacTTAAGCCTGTTTGAGaggacgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgcgtttacGCTTAGGAGCCTTTTACAACAGGGTGCTGTCATATCCTGTTACTgttatgcattttcatttttggaattTAAAATCGATGTTTCTGCTGACTGGATGTTTTCCTCTTATCAATTTCTCTAGGTAAATACGCATAATTTTAATAGGACAAGCACTATGGTTTTCATATTTATCAATCACTGTTGGAGTTTGTTGTGTGCTTGTGTTGTTCTGAAGCCAACCTGAATGACATCAAATGAAATGCAGCCccaaaagctgaaatttcagttCACTGTAGTGCAAGATGAtgaaactgaataaaagtgGCGTGAATGACCCTGCGATGGAATGCTACATGAAATGACGAATTATACTTTATTGTTtgcaaatttatacattttctccGATGCACATGGTATGTTCCAGTAATAAAGTCTGTGTGCACATCATTCAGTGGTATAATGCAATAAGTGAGcgtgaaacaaaacaattttgaaaCCTGTTGATGGAATTTTCTCTAATAAAGTTGCGTATACATATAAA

Function

GO: NA

KEGG:

id description
K10612 CUL5; cullin 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155556 lncRNA downstream 29106 10173478 ~ 10175599 (-) True G105339
TU155535 lncRNA downstream 91685 10112785 ~ 10113020 (-) True G105329
TU155526 lncRNA downstream 110715 10086832 ~ 10093990 (-) True G105321
XR_006252698.1 lncRNA downstream 413530 9780732 ~ 9791175 (-) True LOC122359357
TU155459 lncRNA downstream 454216 9749836 ~ 9750489 (-) True G105279
TU155585 lncRNA upstream 29344 10243948 ~ 10249609 (-) True G105361
TU155586 lncRNA upstream 30860 10245464 ~ 10251995 (-) True G105362
TU155587 lncRNA upstream 35204 10249808 ~ 10250125 (-) True G105363
XR_006252600.1 lncRNA upstream 54600 10269204 ~ 10269968 (-) True LOC122358386
XR_006252621.1 lncRNA upstream 69418 10284022 ~ 10284472 (-) True LOC122358536
XM_043258148.1 mRNA downstream 1523 10200476 ~ 10203182 (-) True mrpl28
XM_043258991.1 mRNA downstream 14607 10188723 ~ 10190098 (-) True mos
XM_043258392.1 mRNA downstream 31970 10164709 ~ 10172735 (-) False lgals17
XM_043259788.1 mRNA upstream 1259 10215863 ~ 10227750 (-) True itgae.2
XM_043258487.1 mRNA upstream 37988 10252592 ~ 10254569 (-) True LOC122358604
XM_043258488.1 mRNA upstream 44631 10259235 ~ 10261167 (-) True LOC122358606
XM_043258489.1 mRNA upstream 49864 10264468 ~ 10266680 (-) True LOC122358607
XM_043258490.1 mRNA upstream 55397 10270001 ~ 10272083 (-) True LOC122358608
unassigned_transcript_2150 other downstream 1292 10203327 ~ 10203413 (-) True trnastop-uca
TU155454 other downstream 407815 9763871 ~ 9796890 (-) True dynll2a
TU155453 other downstream 407815 9793748 ~ 9796890 (-) False dynll2a
TU155158 other downstream 648918 9552634 ~ 9555787 (-) True G105059
TU155103 other downstream 767908 9434426 ~ 9436797 (-) True G105022
TU155809 other upstream 298590 10513194 ~ 10514062 (-) False atf5b
TU155899 other upstream 444333 10658937 ~ 10661150 (-) False cryaba
TU156055 other upstream 871215 11085819 ~ 11092713 (-) False igsf9ba
TU156117 other upstream 1088817 11303421 ~ 11304562 (-) False LOC122358622
TU156125 other upstream 1115298 11329902 ~ 11331898 (-) False LOC122358625

Expression Profile