RNA id: unassigned_transcript_2015



Basic Information


Item Value
RNA id unassigned_transcript_2015
length 73
RNA type tRNA
GC content 0.53
exon number 2
gene id trnar-ucu_22
representative True

Chromosome Information


Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9030341 ~ 9030430 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggctctgtggcgcaatggatagcgcATTGGACTTCTAattcaaaggttgtgggttcgagtcccaccaGAGTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154751 lncRNA downstream 301354 8716395 ~ 8728987 (-) True G104809
TU154755 lncRNA downstream 328299 8595677 ~ 8702042 (-) True G104812
TU154749 lncRNA downstream 352018 8586628 ~ 8678323 (-) True G104808
XR_006252678.1 lncRNA upstream 2169 9032599 ~ 9038328 (-) True LOC122359047
TU154923 lncRNA upstream 109628 9140058 ~ 9140422 (-) True G104922
TU154948 lncRNA upstream 204440 9234870 ~ 9235087 (-) True G104936
XR_006252658.1 lncRNA upstream 234065 9264495 ~ 9295511 (-) True LOC122358921
TU155006 lncRNA upstream 361603 9392033 ~ 9392240 (-) True G104975
XM_043258582.1 mRNA downstream 35127 8988322 ~ 8995214 (-) True si:dkey-260j18.2
XM_043258580.1 mRNA downstream 42653 8981480 ~ 8987688 (-) True slc5a2
XM_043259572.1 mRNA downstream 58020 8963504 ~ 8972321 (-) True coq8b
XM_043259589.1 mRNA downstream 82926 8923331 ~ 8947415 (-) True numbl
XM_043259144.1 mRNA downstream 123036 8879774 ~ 8907305 (-) False dpf1
XM_043259162.1 mRNA upstream 8466 9038896 ~ 9046115 (-) True LOC122359046
XM_043259838.1 mRNA upstream 207591 9238021 ~ 9248654 (-) True mfsd8l1
XM_043259304.1 mRNA upstream 219488 9249918 ~ 9251941 (-) True polr2h
XM_043259001.1 mRNA upstream 266671 9297101 ~ 9303873 (-) True ncl
XM_043258365.1 mRNA upstream 280656 9311086 ~ 9313456 (-) True nppc
unassigned_transcript_2014 other downstream 284 9029984 ~ 9030057 (-) True trnat-agu_24
unassigned_transcript_2013 other downstream 579 9029689 ~ 9029762 (-) True trnat-agu_23
unassigned_transcript_2012 other downstream 885 9029383 ~ 9029456 (-) True trnat-cgu_9
unassigned_transcript_2011 other downstream 1578 9028690 ~ 9028763 (-) True trnat-agu_22
unassigned_transcript_2010 other downstream 1871 9028397 ~ 9028470 (-) True trnat-ugu_11
unassigned_transcript_2016 other upstream 182 9030612 ~ 9030685 (-) True trnat-cgu_10
unassigned_transcript_2017 other upstream 482 9030912 ~ 9030985 (-) True trnat-agu_25
TU154918 other upstream 9157 9039587 ~ 9040873 (-) False LOC122359046
unassigned_transcript_2018 other upstream 305770 9336200 ~ 9336273 (-) True trnat-agu_26
unassigned_transcript_2019 other upstream 306090 9336520 ~ 9336609 (-) True trnag-ucc_3