RNA id: XM_043258582.1


Basic Information

Item Value
RNA id XM_043258582.1
length 4258
RNA type mRNA
GC content 0.45
exon number 5
gene id si:dkey-260j18.2
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 8988322 ~ 8995214 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAGCAGAGCGGAAGTTTGGTGTGTTGTTCCGGCAAGTGACAGAATCCCTCAGCTCGCTTCGCCTCCAATCATGGAGCAATGTTGGCATCTGTGATCAGTAGTTGACATTACTGACCAAACAATCATTTGTTTCTCCCGGGACTACGTTTTTTATCTGGGCCTAACTGGATTACCAGCCTTTAATGATCTGCATGGAGCCGTGCTCGACAGTGTGGATGTATCAGGCGCGCGAGTGTATTTTTGTGCTGATATGCTAAGGATGGACAACACACCGTAATGAGCCGACCAATTTGCGCTGAAACTACCCAGGAAGGTCAAGGCGTTGTGAACGGGCCGAAGAGTATCAGGCCGTCTGTACCAATCTGGCGCCCTGAGAGCCTTGATGCACGAAATCGAACTCAAGACACCCCGAGAATTAAGAGGATACCCATCACCCAGATCTGTGCCGCTGGGCTCCACTCTCACACTTTCTGATAGAAACCCTCACCTCGCAtgATGAATACTGTGAGAAGTGGTGCGGTTACCTGGCGACCACAGCCATGGCAGGATGCAGATAGAGGTGGTGGAGAGCCTCTCTCGGATAGCGACTCGGAGGAAGAGGATTTTCCTGATGACTACTCGACTCCTTTGGGGGAATATGTAACTCAGGGGTTAAAACAGCTGCTTGATGCTCAGCAGTTGTGTGATGTCACTCTTGTGGTGGAGGGGAAAAAGTTTATGTGTCACAGagttCTTTTAGCAGCAGTCAGTCCGTATTTCCGTGCCATGTTTACCAGCCCTCTCGTAGAGTCCCGACTAACTGAGATCCGACTTGAAGAGGTGACTCCTTCTGTTATGGAGACAGTTATCCATTTTGTGTATACGGGAGAAGCAGGTCTTAGTCTTGACACGGCAGAAGACTTGTTTGTAGCCGCCAATCGTCTTCAAGTGATGCCCTTGCAGGACCTTTGCTCTAGATTCCTTTTTGAACACCTGTCTGTGGAGAATTGCCTGGGCATGTACTCTCTGGCTCGTTCACATCATGACCAGCTGCTTCTTCGAGCTTCTTTGAGACTGGTGGGCCAGCATTTCCCTCGAGTGGCCCGGCAGCGGGATTTCCTCCTGTTGGACCCGGGAACTCTTGGCAGCTTGTTGGAATCGGATCGATTGGGTGTGGAGTCTGAGACTGAAGTGTACGATGCAGCGAGGCGCTGGGCAGAATACCAGCCGGCTGATCGTTACAGTCACATGCCCAATTTGTTACGCCATTTACGCCCCGGCCTTTTCGGCCCTGAAGAGAGCCACCGAATGAACCAAGAACTTGGACCTCGAACGAGTACCGAGGGCATGGGGGGACCCTTGAGGCCTCGAGAAGGCATGTTTGAGAAGAAAATAGTCTGTGTAGACCTTAAGCCGAGGGAGGATGAGTCTCTACAGGAAAGGGACTTCACGGTGGACTGCTTTGACCCTCGCACGGGAAAGTGGGAGAAGCTGGCAGCCTTGGGCTCGTTGCTTTGTCCCGGCTGCACTGCTGTCGGAGGCCGACTGTTTGTGGCGGGAGGCATCCTGCGGAGTTCCGAGGTCTCCTCAGCGCTTCACGAGTACGACGTCGTGCTAAACCGTTGGATTGTACAGCCATTGATGGCTGAACCGCGCGCGATGTTGGGTCTTCTTGGCTGCGGAGGTTTTTTATACGCTCTCGGTGGCTGTAACCGAGCAGCCTTTCTGGACACATCTGAAAAATTTGACCTTAACACGCTGACCTGGGCATCAGGACCTCGTTTGCCATTGCCGTTGCGCTCTTTTGCTTGCGCTGCCCTCCGTTGTCGTCTTTACTTGCTTGGTGGCACCACACTGGAGCAGAGCAGGGCCGTGGTGCATGCTGGCGTGCTAATATACCACACGGTTACAAACACCTGGAGCCGTGTTGCCCTAGACTCTGGCGCCACCTGTCTGGCTGGAGGCGTGGCAGTGCGTGGCGGCGTTTGCGCCATTGGTGGTTACTTGCGTGATGCCGCCAAGTTTCTCAATGGCAACTACACCCAAGCTGAACCACTAGATGCCACAGGACGTGTGTTGTTCTTCCGAGAAGGAAGAGGATCTGGAGTGGAGAGGGAGGTGGCGGTCGGAGTGGAGCGTGGGGGTGGCGGAAGCGACCGCGCACCTAGTCCGGTGGTTTTTCCTGGCCTGCCGAGGCGGATTGCTGCTGGAGGTGTGGCTAGATGGAAACGCAGGATATATGTGTTGGGTGGTGAAAATGGTTCGAGATTTTATGATAGCGTCTACTGCTGGAAACCCGGCTGGCGAAGCTGGGTCCAAAGACGGGAGAAATTGCCCGGGGAAACAGGAGGAGTTAGCCAGTTTGGATGTACCACCTTGaagtttccaaaaaaacacattttagcacGTCTTCGTGCTGCTCAACAGAAACGGGGAAAGGAGAAACGACCGACCCGGTCATGCAGAGTCATGCGGATCGACAGGACAAGTCAGGaagtgtgatttttgtttttttttttttttttttttttcaccctcccTCCCCCAATGAGACACATGGGCATTTTGGAAACATTTATGCACCTACTTTTACATCTCTACTCTCGGTTGATGTCTAGatgttttaaaattcattattttatttctgcaagCTGAACGCAAGTTTTGGTTTACTAAGTATTGACAGAAAACGTATGTAATGTTTGGATATGATTTCAGAATGTTTTGCtcttgataaaaataataattcttcaCAGATGCCCAAATTTCATCTTAGAATTGGTATCATCGTGGAGAAAACAATTTACACACATGCTTAACTCATCGAGGAACAAAAGTCATTGATGTTTATTTGAAGCAGAATTTTCGTGTTGCTTTGAGGCTGAATGTAGTCTTACACACATTAGAACATATTGCTACCATAACAGTAGCTGTTACTACTGTAAATCATAGCTTAATATGGGATCTCCTGTAATCAGAGTAAGAAGCTTCaaatctttctctttttttccgaTGCCAGTGGTTTCAAATGACACTTATGTTAAACTGCTGCAACTTCATCCAGGTTTTCCATCAACTAGCATCCACTATGCTCTATCCcaaaatttgcattaaaatgctggATGGAAAAACCATCATGTGAATGAAATTTGCATAATGTGCTTAATAAATTTATACACTTCATTTgaggtggattttttttttgtattattattattattattattattattattattattatttttggttagGAAACATGCATAAGCTACCACGGAAATACATTTACTTAGAGAAGAAAAAACTTTGGTCTAGCCGGTCTGAAATTTTAACTCGCAGATTATTGCTAGCACACATGATGTTTGTAAGAGTGTTATATCTGCGCACTCTAAACcacatgtaatttattacatttaataaaggaGCAGATTTCCCATTGACTAcaatttccatttcttttctttttttttttctattgaataTATGGTGCAAATAGTTTTTGCACTATGCCGTTTTGTCTAATGCAATCATAGACCCCGGATGATAACCGCTGATGAACAACGTTATATAATTCTAAATGATGTGGCTATTCAGATTTAATGTTGCAAACcctactgtattttaaatgacttgTTATTCccaaatgcatttactgtcCTGAATTCCTTGCTTATTTGATACAGGAATCTCAAGAtatcaaatgaaaaagaaacactttCTCTTTTACTGCAATTTCTGTCTTTTGATCTCACATTACCGGACTAGCATTGAACAATAACTCAACAAAACGTGAGTCTTAACATTAACCCGATCCATGTTATAGTATCTTGTGCGGTTTTTGTGGTGTCCACTTGAAGTCGGACATCTCTGGAAGAGTTAATGATGACATAGTGATTGATTTTCTGCACATCGTTGTAACGCACTGTTCAGCTTGCCCTCAATGAAGTGGATCAGTATACGTATCTGTAGTGATTTAATGGCACCTTTTTCGGGTTTAGCCGGTCATCATCtcatctgaaatgttttaaagcatagACGCGCAATAGAAACCAAATGACTGCTTTTTGTACGATcgatttcattttgttttagttttctaaGTTATTGTAAATTTGTCTTACAGTAACATTTTCGCAGAGACAAAGAGACTCTGTACTTTCATCTGATGTCAAACaggtctgtttgtttttgaagaccTACAGTTGTCAAATATTGAACATTGTTTGAATGGAAAGTCTGTGCTCtggtttgcattaaataaattgaacGGAAGTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154751 lncRNA downstream 259335 8716395 ~ 8728987 (-) True G104809
TU154755 lncRNA downstream 286280 8595677 ~ 8702042 (-) True G104812
TU154749 lncRNA downstream 309999 8586628 ~ 8678323 (-) True G104808
XR_006252678.1 lncRNA upstream 37385 9032599 ~ 9038328 (-) True LOC122359047
TU154923 lncRNA upstream 144844 9140058 ~ 9140422 (-) True G104922
TU154948 lncRNA upstream 239656 9234870 ~ 9235087 (-) True G104936
XR_006252658.1 lncRNA upstream 269281 9264495 ~ 9295511 (-) True LOC122358921
TU155006 lncRNA upstream 396819 9392033 ~ 9392240 (-) True G104975
XM_043258580.1 mRNA downstream 634 8981480 ~ 8987688 (-) True slc5a2
XM_043259572.1 mRNA downstream 16001 8963504 ~ 8972321 (-) True coq8b
XM_043259589.1 mRNA downstream 40907 8923331 ~ 8947415 (-) True numbl
XM_043259141.1 mRNA downstream 81016 8856568 ~ 8907306 (-) False dpf1
XM_043259162.1 mRNA upstream 43682 9038896 ~ 9046115 (-) True LOC122359046
XM_043259838.1 mRNA upstream 242807 9238021 ~ 9248654 (-) True mfsd8l1
XM_043259304.1 mRNA upstream 254704 9249918 ~ 9251941 (-) True polr2h
XM_043259001.1 mRNA upstream 301887 9297101 ~ 9303873 (-) True ncl
XM_043258365.1 mRNA upstream 315872 9311086 ~ 9313456 (-) True nppc
XR_006252682.1 other downstream 937612 8044822 ~ 8050710 (-) False nipsnap2
TU154597 other downstream 1030091 7957836 ~ 7958231 (-) True G104695
TU154509 other downstream 1347983 7639644 ~ 7640339 (-) False G104628
TU154511 other downstream 1347983 7639644 ~ 7640339 (-) False G104628
TU154467 other downstream 1416232 7569846 ~ 7572090 (-) True G104603
unassigned_transcript_1962 other upstream 9205 9004419 ~ 9004492 (-) True trnat-agu_3
unassigned_transcript_1963 other upstream 16053 9011267 ~ 9011340 (-) True trnat-ugu_1
unassigned_transcript_1964 other upstream 16353 9011567 ~ 9011640 (-) True trnat-agu_4
unassigned_transcript_1965 other upstream 17584 9012798 ~ 9012871 (-) True trnat-cgu_2
unassigned_transcript_1966 other upstream 17879 9013093 ~ 9013166 (-) True trnat-agu_5

Expression Profile