RNA id: XM_043220339.1


Basic Information

Item Value
RNA id XM_043220339.1
length 1709
RNA type mRNA
GC content 0.58
exon number 8
gene id rnf8
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 24575348 ~ 24582578 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTAGAGTGGAAGCGCAGAGTTCTTGTGAAAACTCTTGCGCGGCTTCATGGCGGTATGTGGCGGACaagacacaataaaaacaatacaacttCACGCTGATTAATGGCGCAGGAATGATGGAAAAGACCGAAGAGCCTCCTTCCTCAAACACCGAGGAAGAGGGttctgaaaaagacaaaatctgGTGTTTACAGCGCGTGGGGAAGGACCGTGACTGGCTGCATCTGTTCGAGGGCTCAGAGGTTTCTGTTGGTCGTGGTCTAAACGTGACCCATCAGATTCTGTCGACCAGCTGTCCACTGATGATATCCAGAATCCACTGTTTGTTCAAGAAAAATGATGATGGAGAGTGGACAGTGACGGACAATAAGAGTCTGAATGGCGTGTGGATCAACGGGAGCCGGATACCGGCTGGAAACCCGTTTTTACTCAAGCAGGGTGACTCTGTGCGGCTCGGAGTGCCTCTCGACGGCAACCCGGTGGAGTTCGACTACATCCTCGCGCAGAAGAACCTCAGCGACGTCAAGTCCTTCCTGTCCGGCAGAGAGTCCGACGCCGCTCCCGTGGGCCAGAAACTGAAAAACTCCAAGCGCAAGTTCGACGGGGACGAGTCGGAGCCGTGTCCCACGCAGAACTCCAAGTCCAAGCTGTACCGCAGCTCCGGGCCGGATAAGTCTCGAGCGCAGCCCTGTCCGTCCGCGGAGCGCCGGGAGACGGGCCGCTTCTCCTCTAAACCCCCGGAGGAGGACCGCGGCGGCGATAAAGCGGGGAGCAGCTCGGGCGGCGGCAGCGAGAGCAGCCAGCAGCTGGCCAGCGTGCGCCGCTATAACAGGAACCTGCTGGCGCTAAAGGGCCGCGTGGGACACACGCAGAAGCGCGCGGCGGAGCTGGAGCGGCAGCAGCACCAGACGCCCGAGAGAGAGCGGGAGATGCAGGACCTGCAGGCGCAGCTCGAGCTGCTCCGGGGTCAGCTGAGGTCACAGCAGGAGCAGGCCCTCAGACGCATGGAGACCCTGGAGAAGTCCTTCTGTGAGGAGGAGAGACGGCTGGAGACCGAAAAAGCACAACAGAACGAGGAAGGCTTGAAAAAGCAGCTCGAGGCGGCGTTGAAAGAGCACCGGAAAGTTATTGAGGAGCTCAAACACGCTCGAGAAGGATTTAAGGAAGTTCTTCAAGCCAAAGATAAGGAGCTGGAAGTTACAAAGgaagagaaagaaaaggccAAAGCTCAGAAAGAGGAAGTGGTCACACAGATGACCGAAGTGCTCGAGAGTGAACTGCAGTGCAGCGTCTGTTCTGAGCTCTTCATCGAGGCCGTGACGCTCAACTGCGCCCACAGCTTCTGTCAGCACTGCATTCGAGAGTGGCGTAATCGCAAGGACAAGTGTCCCATGTGCTGGCAGACCATCACGTCCCAGACGCGCTCTCTGGTCCTGGACAACTGCATCGACCGCATGGTGGAGAACCTGAGCGCCGACATGAGAGAGCGACGCCTGGCGCTGATCAATGAGCGGAAAGGTGAGAGGTCAGAAAGCCAGCGTGTCCCCGGCCGTGGTGGTAATAAATGACGACAgcgacagcagcagcagcagcgacACGTTCTTTCAGAGCGACAGCTCCGTGTTCCTGGACTCCTCCGAGTCTAACGGCTCTCTGGTTCACTACCCCatcgacgacgacgacgacgacgactcGTCCTGGACCGACG

Function

GO:

id name namespace
GO:0006303 double-strand break repair via nonhomologous end joining biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0070535 histone H2A K63-linked ubiquitination biological_process
GO:0007286 spermatid development biological_process
GO:0045190 isotype switching biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0033523 histone H2B ubiquitination biological_process
GO:0045900 negative regulation of translational elongation biological_process
GO:0051301 cell division biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0043486 histone exchange biological_process
GO:0000781 chromosome, telomeric region cellular_component
GO:0035861 site of double-strand break cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003682 chromatin binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209088 lncRNA downstream 29945 24545016 ~ 24545549 (-) True G141624
TU209086 lncRNA downstream 51663 24522383 ~ 24523831 (-) True G141622
TU209098 lncRNA downstream 53283 24521977 ~ 24522211 (-) True G141634
TU209091 lncRNA downstream 131304 24440791 ~ 24444190 (-) True G141627
XR_006247277.1 lncRNA downstream 216656 24356942 ~ 24358838 (-) True LOC122325262
TU209133 lncRNA upstream 29289 24611866 ~ 24616647 (-) True LOC122325459
XR_006247301.1 lncRNA upstream 31694 24614271 ~ 24616410 (-) False LOC122325459
TU209141 lncRNA upstream 109425 24692002 ~ 24692486 (-) True G141662
TU209121 lncRNA upstream 142365 24724942 ~ 24726684 (-) True G141648
TU209124 lncRNA upstream 144484 24727061 ~ 24727733 (-) True G141650
XM_043218614.1 mRNA downstream 6366 24555748 ~ 24569128 (-) True tcte1
XM_043219086.1 mRNA downstream 31445 24532504 ~ 24544049 (-) True nfkbie
XM_043219085.1 mRNA downstream 43131 24524069 ~ 24532363 (-) False slc35b2
XM_043219084.1 mRNA downstream 43131 24524069 ~ 24532363 (-) True slc35b2
XM_043219080.1 mRNA downstream 64964 24492752 ~ 24510530 (-) True rbm25b
XM_043219986.1 mRNA upstream 1207 24583784 ~ 24587254 (-) True LOC122325099
XM_043220506.1 mRNA upstream 37881 24620458 ~ 24673062 (-) False disp1
XM_043220504.1 mRNA upstream 37881 24620458 ~ 24646356 (-) True disp1
XM_043220505.1 mRNA upstream 37881 24620458 ~ 24644158 (-) False disp1
XM_043219699.1 mRNA upstream 91633 24674210 ~ 24677624 (-) True LOC122324925
TU209099 other downstream 44619 24525882 ~ 24530875 (-) False slc35b2
TU209065 other downstream 314458 24257786 ~ 24261036 (-) False LOC122324315
TU208856 other downstream 568829 24004687 ~ 24006665 (-) True G141502
XR_006247216.1 other downstream 752444 23792077 ~ 23823050 (-) False tbc1d32
XR_006247156.1 other downstream 1174103 23390467 ~ 23401391 (-) False mcm9
TU209178 other upstream 265088 24847665 ~ 24851761 (-) False rhpn1
TU209665 other upstream 746003 25328580 ~ 25329605 (-) False wasf1
TU209701 other upstream 748349 25330926 ~ 25377416 (-) False wasf1
TU209689 other upstream 810543 25393120 ~ 25407942 (-) False mettl24
TU209680 other upstream 813631 25396208 ~ 25407942 (-) False mettl24

Expression Profile