RNA id: XM_043218614.1


Basic Information

Item Value
RNA id XM_043218614.1
length 1585
RNA type mRNA
GC content 0.57
exon number 5
gene id tcte1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 24555748 ~ 24569128 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATGACGACGACAAACTTTACGGAGAAGCTGAAAGTGAGTAGCTAACGTTTACCTGTCGACTCGCCTAACGAACGAGCTTCGCGTGTCTTCGCTCGAATTCCTCATTTTAAACGTGTAATATGCCGAAAAAGGAGTCTCTTTAACGTCCGTCGAGAAAAGGTGTTTTAGCTGCATGTCTCGGAGTCGGTCTTCACGGAGAACCGGGAGCATGAGGCCGGTAAACGCCGCCGCTGACGGGCGGGAAATGCGCAGCGTGATCGCGGAGGACCCCGAGTGGTCCCTGGAGCTGGTTCCTCTGCTAACAACCCTCTGTCTGCAACATATCATAAACCATTTTACAGAGAAACCCATTTTGGATGATCTTACGCCCGACTACAAAGCGTACGTCCTCCAGCGACTGCCGACGTCTCTTCCCTTGACGGTCAGCGCAAACCTCATCAGTGACGAGGGCTACTGGAAGCGCTGCTGTGAAGGTCGCTGGGCTGTTGGGGACGTCTCGGCGTACGACAACAGCTGGAAACGCATGTTCTTCGAGCGTCACCTGGAGAACATCATTGAATACTTCATCCCGGATGCGACCGACACCAAGACGATCCTGGAGGCGGTGCCACTCTGTCGAAACTTCATAAAACGACTCCGAGTCTCTCAGCTGCTGCCGCCCATCAAAGAGTCGGCCAGGTTTGACGAGGACGACCGCTCGGATTGCGCCAGCGACACGGGCAGCGAAGGACCCTCCATGGATCACTTCGATTTCCGGATGCTGCTCGACAAGCTGCCCAACCTCGTAGAGTTCGACGTGGTGTACGGAGTGAAAGGATGCGGCATGAACTTTGAGTGGAATTTGTTTGAGTTCACCTTCAGAGACTGCGAATCCCTGGCAAAAGCTCTGAATTCCTGCAAGACTTTACAGGTGCTCAGAATCCGTCGCAGTAAGGTGGACAACGAGAAGTGCTGTCTGCTCGTGAGTCAGCTGCTGGATCACCCGTCCCTGCAGGAGCTCGACTTCTCACATAACCACATCGGCGACCGCGGAGCCCGAGCCATCGGAAAGCTCCTGACCCGCGCTCAGCTGAAGAGGCTGGTCGTCTGCAACAACCAGATCAGAGGTCCGGGAGCTCAGGCGCTGGCTCACGCTCTGTCCAGGAACACCAGCCTGGTGTCCCTCAACCTGAGGCTCAACCGCGTCGGGGACGAAGGGGGTCAAGCTCTGGCTCAGGCTCTGGTGAAGAACGGGACCTTGGTGAGCCTTCACCTCGGGGGAAATAACCTGAGCGAACCCACGGCCGTGGCACTGTCTCAGACCCTGGTGGAGAACCGTACCCTCAAGAACCTAAACCTGTCCAACAACAGACTGGGAGTCGACGGCGGGAAGGTCCTGGAGGAAGGGATGTCCCACAACGGCAGTCTGGTGGAGTGTGACATTCGTCTGACCGATGTGTCTCCGGACACGCTATAACGAAGTCTCCACGCAGTGTCCGTTCCGATGCAGCGAATGGCGGTCGTGACCGGCGCAGCCCTCGTTGCGGTGAATAATCAGTACCGGAAAATACAGAGCGTCCTGATAGGCTGGCGGAGAAGGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209088 lncRNA downstream 10199 24545016 ~ 24545549 (-) True G141624
TU209086 lncRNA downstream 31917 24522383 ~ 24523831 (-) True G141622
TU209098 lncRNA downstream 33537 24521977 ~ 24522211 (-) True G141634
TU209058 lncRNA downstream 38005 24267372 ~ 24517743 (-) False LOC122324315
TU209133 lncRNA upstream 42738 24611866 ~ 24616647 (-) True LOC122325459
XR_006247301.1 lncRNA upstream 45143 24614271 ~ 24616410 (-) False LOC122325459
TU209141 lncRNA upstream 122874 24692002 ~ 24692486 (-) True G141662
TU209121 lncRNA upstream 155814 24724942 ~ 24726684 (-) True G141648
TU209124 lncRNA upstream 157933 24727061 ~ 24727733 (-) True G141650
XM_043219086.1 mRNA downstream 11699 24532504 ~ 24544049 (-) True nfkbie
XM_043219085.1 mRNA downstream 23385 24524069 ~ 24532363 (-) False slc35b2
XM_043219084.1 mRNA downstream 23385 24524069 ~ 24532363 (-) True slc35b2
XM_043219080.1 mRNA downstream 45218 24492752 ~ 24510530 (-) True rbm25b
XM_043219689.1 mRNA downstream 70260 24482072 ~ 24485488 (-) True atp6v1d
XM_043220338.1 mRNA upstream 6220 24575348 ~ 24582578 (-) False rnf8
XM_043220337.1 mRNA upstream 6220 24575348 ~ 24582577 (-) True rnf8
XM_043220339.1 mRNA upstream 6366 24575494 ~ 24582577 (-) False rnf8
XM_043220341.1 mRNA upstream 6445 24575573 ~ 24582578 (-) False rnf8
XM_043220342.1 mRNA upstream 6447 24575575 ~ 24582578 (-) False rnf8
TU209099 other downstream 24873 24525882 ~ 24530875 (-) False slc35b2
TU209065 other downstream 294712 24257786 ~ 24261036 (-) False LOC122324315
TU208856 other downstream 549083 24004687 ~ 24006665 (-) True G141502
XR_006247216.1 other downstream 732698 23792077 ~ 23823050 (-) False tbc1d32
XR_006247156.1 other downstream 1154357 23390467 ~ 23401391 (-) False mcm9
TU209125 other upstream 2285 24571413 ~ 24647421 (-) True G141651
TU209178 other upstream 278537 24847665 ~ 24851761 (-) False rhpn1
TU209665 other upstream 759452 25328580 ~ 25329605 (-) False wasf1
TU209701 other upstream 761798 25330926 ~ 25377416 (-) False wasf1
TU209689 other upstream 823992 25393120 ~ 25407942 (-) False mettl24

Expression Profile