RNA id: XM_043224527.1


Basic Information

Item Value
RNA id XM_043224527.1
length 4076
RNA type mRNA
GC content 0.44
exon number 3
gene id plagx
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10070780 ~ 10089818 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCACATCTGATTAAAGTATAACACTTTgatgtattattttagattcTATCATCACTGTAATCAATACATTATTTACACTTACTGAGCTTCTCCAGCGAGCAGTTACCGACAGCAATAATACAACAATTTTAAGAAGCTTTACAGACAAATAATCTTCCTCGTTTTGAATGCTCTTCGTTAAGTTACATCGGTTTCTCACAAGACTACACCGGATGTAATTTTGCACGTACAATTACACGCTGGAAACGCTCCATTGTGAAATGGAAACAATGTTAGACAACCGTCGCTCATTACACGCAGCCGAAGCAAAAACGAAATTGTAACGCGCGATGAACTCAACAGGGAAGAAACGTTTTTGTCAAGTTCTTTCCCGCTCGTGAAGCTTTTCGTTGGCAACTTAAGAGCTCGCGTGCAGCTAACTAGAAGCCGCGAAGCTGAGTGGCGGTACATTAATTGTACCTCGTCAAATATAGTATTATTCATGAATATCGAGACATGCTATTGTTAGAAACGTTAATTATTCCTTCGCTATTGggctcattttaaattaaataattaataattttgataACCGCCATAACGCGTAAGCTGTATTCGTTTTTAGCCTATTTGTAGAACCCGTTGCGATGCGATGCTCCTTTTTGTAACAGTTTAAACGGTGAAAAATAAGAGTGAAATCCCACCCTGAAAGTTGACCAAAGAGGTCTGACGTCACGTTCCCACAATGCACGCGCCCATCAGCTCCAGCGCCGCCGCTGTGTTTAGAGGGAAAGAAACAGCAGGCCcgaaaaatacacacattattgaacaaaaaaaataaattgtccGCCGCGAGTGGTTTTTTGACAATTCGTCGCCGCGTGGCCGGGAGACGAATCTTCTGCCTGCACCCTCGCGAGATGTAGAATGGAGGAATGCGTGTGAACTGCAAGTTTGGCGGAGATCAAAAGTTTCTGActgaacatgcaaaaaaaacaatcttcaCTCTCAAGAAAATTCACCTGTTGGAGCTTCTTCTCAGATGTACAGTGACATAGTCCCTGAGAACTACGCATATATGTGAGAAAATGTTTCATGGCAAAGACCACCTAAACAGCCACCTGCAAAACCACGACCCCAACAAGCAGGAGCTGCGGTGCGAGGAATGCGGAAAGCATTACAACACTCGCCTGGGTCTTAGACGCCACGTGGCCACGCATGCCACCTCCGCCAGCGGTGACCTCACCTGTAAGGTCTGTCGGCAGGCGTTTGAGAGCATGCCGGCGCTCCTCGAACACCTGAGCACGCACACCGGCCGACCACCTCCAGGGACTGTGGTACGAGAAAGAAAGCATCAGTGTGAACGATGCGGCCGGCGCTTCTTCACTCGCAAGGATGTGAGGCGCCACGCGGTGGTGCACACCGGCAGGCGGGATTTCCTGTGCCCGCGCTGCGCCCAGCGCTTCGGCCGTCGTGACCACCTCACCAGACACCTGAAGAAGAGCCACGCGCAAGATCTGGAGAGCCTTCCTCCGGTGTCCATCAAAGAGGAGCCCAGTCCGACCGTGTGCTCTGTTGCATCTCCAAAAGATGCCACGGAGGCGTTTTCCATGGCCATGTTCAACCCTCAAGGCCTTCCGAGCACATCTACCTCAGGGGTCAATCACCACCATCACACAATGGTGTCCGGCCCCCTTTCCAGCCCGATGGGTGTGGGCTGCTACCTTGAGCCAAACAAGCCTCCTCCGCAGCAGTACCAGCAGGCCTCCAGATATCAGCCGAGTTCCACTACCTCATATCTGAAAGCGGAGATGGAGAACTTCCTGACTGAACTCCAGTGTGGGCCCATGCCGCCACAGGCCGCCGTAGCGACTGCCGTCTCCCGGCCCGGCGACCTTCTCCCTGAGAGTCTGGCAGGTCAGAGTGCCCATTTCACCCTCAGGAACTCGGCGTTCACCTCAGCTGAGCCGCCTACCACCTCTCCCAACATGGACCTCTCACACCTGTTGGGCTTCCTGCCGTTTGGCCTGCCTCCCTACAGCACTCCCTTGGGATACTCGACCACCACCAACGCCGTGTCCCCAAGCCCTACCTCTCAGCTCTCTGGGCCCCTTACCTCATTTCAGCCACAGTCACTGCATGAGTCTCAGGCTTCAGGGCACTTAAACCAGCTCTCTGGTTTCTCTCCAACTCTACCTCGATTCCATCAGGCCTTCCAGCAATGATGTCGCCCGTGTCCACTATGACCTGCCAGTCAAACGCGACAGCTCTGTCGCGTCACTGCCAAGTAGCTTATAGGTAATTAACTGGAGAGGGTGAAGTTTGTTGGGTGTGAGGTCTTCATATAGACCCTGTAGAATTAGATGAAAGGATCGCTAGGATAGATGGAgttttgcttttagttttgaTTAGTTTTAACTTTGTGGTTTTTCCTAGAGGTCTTCAGAGTAACTGTTTTGTAGTGATAAATGAACttataaaattcatttaaaaaaaaaaaaacaaaaaaaaaaaactgaaagtgaaaagTTAGCTAAAGAAATACCTCAATATTTTTGTCAAGAAGGAAAATAATGCTATTACAGTGTTCTCCGTTGTATAATGAAGCACTTTTTATCAACGGCACTTCTAAGACTAAAGGTGCGGTCACATGTATTGTTCTGCAAATTTTCATTTGGATCAATAGGAATCTACATGGGTACTTTTGCGTGTGGGTGAAAGACTTCCCTGCGCAAATTTCACAACCAGGTAATGTAAATTTAACGCATTGACCAACAACTTTTGTGTGCGCTGTGCTTCATACATCTACACTATTGACCTTTTTTTGTCCATGAAAATTTGCTAGTGTGACCGCACCATAAAAGTCAAGTTGAACTGTGTTCTTAGATGTACCTCTCAGCTCACGGtcacacaacacaaaaaaaaacctacctCTCTAAGCTGAACTCTTGTCACGAAAAGGATTCAACCATTTGACAAGAAATGAAGCAAATCCTCACGCGAATTGCGTGAAGAACGTTATCtcaattgattttcttttttctttttgaatgctCAGTGGTTTTAGTTCTGAAATATTTAGAGTCAGGTGattaattagcatttaattaattagcttGTGTTGATTTTAGCCTTTAGGTAAACGTTCTTAGGCACTGTTGTGTTCATATCATTAATGCTAATGAAAGGAATCACAGTTATTGTGGAGACTCATCTCCTGTAAATCCCCATCTCTCTGTTCATTCCAGAGTGTATCGTGAAAAATGCGGAATAAAGCATTGATCCTTCTGGAATTTAAGATAAATGAAAAttgaaatttgtttaaaattaagtatCCGTTCTGACAAATTCCTAATATGGGAACTAagtaaaatataactttttttttttcttttttagtaataaacaaaaattgatCATATGTTAAACTGCGAATAAACTACGATACGTAGTTCTCACTACAAAATTCAGATGTTTTAGACAAAATTAAACTTAGCACATACCCAGTTATTGCTGAAAAGCACTTCATGTATCTCTCCTTGCTAAACCAGGAgcactgtcagaaaaaaaaaatgttttgtcatgtAAATTTGAATGGTATTTTAGCACTGCTTCGCTGTCCATTCTTTTGACTCAGTGTTACATGCACCAGTGGCCTACAAGGCAACTGTGATGGCATTTGTTGTCAACTCCATTTTGTTTAGGCCAGCTGAAGGTTTGAAAtcatttcatgattttttttcttttatttagaagCCATCATGGGCATTTCCTTCATCAgctaaactgaaatgaaattgaCCTCAACTCAACTGTGATATTTAGACTCAGACTGATCTACCTCAGTGAGATGCACGCTGTGCACAGCTGTACTGTACCTTTAGTGAGAAATGTAAAGTTTCAATGGCTGTTTAGCTGGAGTAAACAGGTGTTTTACATCTTTAAAATTCCAAGCATTGGCGTTTTTGGGTTCCAAGgactgtttgttttcatgaacattttgaaagcaaaagtggACGAATGAGAGATTAAGGTGTATGCGGAAAGAAACAATGTTAAGGATGAATTAAGAAATAAAGCATCTTGTAGAATTTGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231228 lncRNA upstream 89142 9994446 ~ 9994653 (+) True G156142
TU231180 lncRNA upstream 110261 9880762 ~ 9973534 (+) True G156109
TU231179 lncRNA upstream 160570 9922141 ~ 9923225 (+) True G156108
XR_006247821.1 lncRNA upstream 195416 9885045 ~ 9888379 (+) True LOC122328703
TU231169 lncRNA upstream 268486 9813217 ~ 9815309 (+) True G156098
TU231273 lncRNA downstream 45037 10134855 ~ 10145461 (+) True G156168
TU231292 lncRNA downstream 72180 10161998 ~ 10163976 (+) True G156182
XR_006247831.1 lncRNA downstream 164968 10254786 ~ 10256406 (+) True LOC122328771
TU231342 lncRNA downstream 174172 10263990 ~ 10346054 (+) True G156217
TU231344 lncRNA downstream 240033 10329851 ~ 10335225 (+) False LOC122328781
XM_043224466.1 mRNA upstream 1236 10067453 ~ 10082559 (+) True pan2
XM_043224469.1 mRNA upstream 1236 10067453 ~ 10082559 (+) False pan2
XM_043224467.1 mRNA upstream 1236 10067463 ~ 10082559 (+) False pan2
XM_043224519.1 mRNA upstream 26322 10053646 ~ 10057473 (+) True nemp1
XM_043224548.1 mRNA upstream 30337 10049940 ~ 10053458 (+) True si:dkey-126g1.9
XM_043224545.1 mRNA downstream 609 10090427 ~ 10092452 (+) True trappc6b
XM_043224481.1 mRNA downstream 2950 10092768 ~ 10098638 (+) True tpx2
XM_043224483.1 mRNA downstream 2950 10092768 ~ 10098638 (+) False tpx2
XM_043224482.1 mRNA downstream 2993 10092811 ~ 10098638 (+) False tpx2
XM_043224474.1 mRNA downstream 9247 10099065 ~ 10106692 (+) True mylk2
XR_006247902.1 other upstream 248316 9835395 ~ 9835479 (+) True LOC122329332
XR_006247904.1 other upstream 248625 9835096 ~ 9835170 (+) True LOC122329334
TU231143 other upstream 314175 9724218 ~ 9769620 (+) False G156081
TU231564 other downstream 325853 10415671 ~ 10417898 (+) False LOC122328383
TU231621 other downstream 461279 10551097 ~ 10554720 (+) True LOC122329061
TU231625 other downstream 473526 10563344 ~ 10572246 (+) True G156399
TU231641 other downstream 609109 10698927 ~ 10700895 (+) False G156414
unassigned_transcript_2617 other downstream 812251 10902069 ~ 10902140 (+) True trnae-cuc_40

Expression Profile