RNA id: XR_006247831.1


Basic Information

Item Value
RNA id XR_006247831.1
length 1392
lncRNA type sense_over
GC content 0.37
exon number 3
gene id LOC122328771
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10254786 ~ 10256406 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAAAGACCTCTTGTCATGTCGATGCGTCAAATTCGGTGTTCTCTGACCCATGTCACCATGTCTATAAGTACCTGGAAGTGACATACTCCTGCATATGAGTTTATGAAGCACGATCTGCATCGGTCCTTGAGGAAACAGCCTGGAGGAGCAGAAGCACATCTTTTTCTTAGCAAATTTCTTAGCTAATTGTgttctcttttctttaaatctgctttgaaactttttttttcatacaaataaattgcatttgaaattaCATCTGCCTTTCCTCCTTCTGACACACTGGTGTCCTTTGAACAACCATACGACATTGCACAAATTATTAcagtagcatttatttgaacaaatatttaactGTATATAATACAGCATATTGTTTAAAGCAATAtgaaataagtgtttttaaggAAAATAAGTATAATATGCAGAGAATGTGAAACACTGATACACTATTATACTTTCTTCTCAGTGGTAATTTGGGATTGAGCTTATCAGATGCAGCAAGCATTTTTGTTATTGCATTTGTAATCATGCCAAAACAGTTAATGTCCATTGTATCATTAAAACATGCAGATAAGTAATGAGGAATGCTCAACACTCAATATaaaagacatcttttttttcatttccctgTTCGGAAAATACTTTATGACCAGTCAAAGATAACAAAATGACATCTACAGATCAAAAGGCCAAGGATATGGAAATAATTCCTACGTTTAGTATAACAAGAGCCGAAGATGAAGCTGAAAAATGACTGCCTGCCGCATTGAGACTCCCTTTATTCCTCACTGCCATTACCCACACACATTTagatggtcttttttttttgagcagcagcAATACAAAAGTCTTGCTGTAGATTTGCTTGTTCTGGTGAGCATTTTCTCAATCTCTTTACTTGCTTCAAAGCAGCAGCAACATGCAGATCGATTCAGCTGAGACCACAAATATTACCCCCGCCTTGTCATATTACCCCATACCACGCCAATATCCTAGAGTTGTCATGATAGAACTGTGTTGATATAACGCCATATTTTGGAAAACTCTTTGCCCAGGGATGACCAGAGAACGTGGTCTTGAGAAGTTCTGGAAATGTGAACGCACAAAATCATACTTTACCTCAACAGGAACATGTGTCTTCGTCAGACATCTGTTGTTCTTCTGTTCACGCATTCAACGTGCTGGTGCTAAAGCTAAGTTGTATCATTTTGCTGGTCTTCCTGTGTCAGTATGGTGAGAATGGCAGTTTActaatgtgtaattaaataaaaaaagatctgaAGAAAGATCTGTGCGCCTCAGCTGTAGTGAGTAACAGTCATTTCTAGATTTTTGGTGTTTTGTGCCCAAATTGCACAGTATACAGTTCCTGTGTCTtgaaatttgt

Function

GO:

id name namespace
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231292 lncRNA upstream 90810 10161998 ~ 10163976 (+) True G156182
TU231273 lncRNA upstream 109325 10134855 ~ 10145461 (+) True G156168
TU231264 lncRNA upstream 165031 10070780 ~ 10089755 (+) False plagx
TU231228 lncRNA upstream 260133 9994446 ~ 9994653 (+) True G156142
TU231179 lncRNA upstream 331561 9922141 ~ 9923225 (+) True G156108
TU231342 lncRNA downstream 7584 10263990 ~ 10346054 (+) True G156217
TU231344 lncRNA downstream 73445 10329851 ~ 10335225 (+) False LOC122328781
TU231275 lncRNA downstream 130554 10386960 ~ 10387500 (+) True G156169
TU231277 lncRNA downstream 131462 10387868 ~ 10388626 (+) True G156171
TU231594 lncRNA downstream 258586 10514992 ~ 10518751 (+) True LOC122328447
XM_043224692.1 mRNA upstream 10945 10240311 ~ 10243841 (+) True taf8
XM_043224515.1 mRNA upstream 37185 10212843 ~ 10217601 (+) True slc39a5
XM_043224543.1 mRNA upstream 130575 10121748 ~ 10124211 (+) True zgc:56699
XM_043224539.1 mRNA upstream 137830 10108293 ~ 10116956 (+) True cd63
XM_043224474.1 mRNA upstream 148094 10099065 ~ 10106692 (+) True mylk2
XM_043225446.1 mRNA downstream 59679 10316085 ~ 10322007 (+) True LOC122329250
XM_043224717.1 mRNA downstream 74005 10330411 ~ 10363818 (+) True LOC122328781
XM_043225494.1 mRNA downstream 112047 10368453 ~ 10381390 (+) True LOC122329277
XM_043224055.1 mRNA downstream 159257 10415663 ~ 10427162 (+) True LOC122328383
XM_043224362.1 mRNA downstream 172871 10429277 ~ 10432503 (+) True LOC122328600
XR_006247902.1 other upstream 419307 9835395 ~ 9835479 (+) True LOC122329332
XR_006247904.1 other upstream 419616 9835096 ~ 9835170 (+) True LOC122329334
TU231143 other upstream 485166 9724218 ~ 9769620 (+) False G156081
TU231564 other downstream 159265 10415671 ~ 10417898 (+) False LOC122328383
TU231621 other downstream 294691 10551097 ~ 10554720 (+) True LOC122329061
TU231625 other downstream 306938 10563344 ~ 10572246 (+) True G156399
TU231641 other downstream 442521 10698927 ~ 10700895 (+) False G156414
unassigned_transcript_2617 other downstream 645663 10902069 ~ 10902140 (+) True trnae-cuc_40

Expression Profile