RNA id: XM_043224543.1


Basic Information

Item Value
RNA id XM_043224543.1
length 1074
RNA type mRNA
GC content 0.43
exon number 8
gene id zgc:56699
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10121748 ~ 10124211 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACGAAAcgaattaaagtttttaaatagtgCATCACGTGGTATTTCATAGTCACGGCGATTGATTGACGATCACAGTGGATTGAAGTCGAAGGGGAGGAGAGCACGCGCCGTATCTCACgactacaaaagaaaaaagttCCACCGGGGCACTCAAGGCTGAGCAAACTAACCAGACCTCCAGAAGGAAGCAAGCATGGCCGCTATAAGATTCGGGAGTAGTGTTGGTCCGTCTGGAATAAACTCTGAACATCAGCAGCAAGGCTGGAAAGAAGAGACCGCTTATGAAGACGCCGATGATGCCATTGACCCCAACAGGATTGTACAATGCCCTTATGACAAAAACCACCAGATCAGGGCCTCTCGCTTCCCTTTTCATGTTCTCAAGTGCAGGAAGAACCACCCCAAACTGGCCAGTGAACTGAAGACCTGCCCCTTCAATGCCAGGCACTTGATTCCCAAGCATGAGTTGTCTCATCACATTGCAAACTGTGAAGACAAGAGGATGTTAAATGCTGAAGATGgaaaTGTAGAGTTGCTAGAGAAGTTCCAGGTGCCTGTTAACAACTGGACAAATCCTTCACCCAATGAGGACTGGGAAACAGAAACTGATGATAATGCTGCTATGTTTGTCTGGGGTGAATCCAACAATCAGCTTGCCCAAAACAAGCCAGAGCCGTCTACCACTAACAGTTTATCTGATGGACTTCGGGCACCACGGACTCTTCCATGGAAACTCTgATGCCACCACTGGATGGACTTCACTGGCTAGTCTTActtatttaatacttttgatCCCTGCGTGACTTCTAGCCTAACTTTGTTTAAAgtgtactttatatttttatattttttaattttacagtgttGTGAAGTTTCCTATACAATACGCTGTCTATAACTGTCTAACTGCGTGGTATGCTATGTGTAGAGAGGCTCCTTATTAAAGCAAATAATGTCATATTACAAGCAGAAACCATCAGTGCCTATCTCTCTGGGCTATTTGCtttgaacatttgttttatgaaagTGTTAACCTGATGTATGATTATTAaaggtttctttaaatgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231264 lncRNA upstream 31993 10070780 ~ 10089755 (+) False plagx
TU231228 lncRNA upstream 127095 9994446 ~ 9994653 (+) True G156142
TU231180 lncRNA upstream 148214 9880762 ~ 9973534 (+) True G156109
TU231273 lncRNA downstream 10644 10134855 ~ 10145461 (+) True G156168
TU231292 lncRNA downstream 37787 10161998 ~ 10163976 (+) True G156182
XR_006247831.1 lncRNA downstream 130575 10254786 ~ 10256406 (+) True LOC122328771
TU231342 lncRNA downstream 139779 10263990 ~ 10346054 (+) True G156217
TU231344 lncRNA downstream 205640 10329851 ~ 10335225 (+) False LOC122328781
XM_043224539.1 mRNA upstream 4792 10108293 ~ 10116956 (+) True cd63
XM_043224474.1 mRNA upstream 15056 10099065 ~ 10106692 (+) True mylk2
XM_043224481.1 mRNA upstream 23110 10092768 ~ 10098638 (+) True tpx2
XM_043224483.1 mRNA upstream 23110 10092768 ~ 10098638 (+) False tpx2
XM_043224482.1 mRNA upstream 23110 10092811 ~ 10098638 (+) False tpx2
XM_043224515.1 mRNA downstream 88632 10212843 ~ 10217601 (+) True slc39a5
XM_043224692.1 mRNA downstream 116100 10240311 ~ 10243841 (+) True taf8
XM_043225414.1 mRNA downstream 123700 10247911 ~ 10257228 (+) True LOC122329223
XM_043225446.1 mRNA downstream 191874 10316085 ~ 10322007 (+) True LOC122329250
XM_043224717.1 mRNA downstream 206200 10330411 ~ 10363818 (+) True LOC122328781
XR_006247902.1 other upstream 286269 9835395 ~ 9835479 (+) True LOC122329332
XR_006247904.1 other upstream 286578 9835096 ~ 9835170 (+) True LOC122329334
TU231143 other upstream 352128 9724218 ~ 9769620 (+) False G156081
TU231564 other downstream 291460 10415671 ~ 10417898 (+) False LOC122328383
TU231621 other downstream 426886 10551097 ~ 10554720 (+) True LOC122329061
TU231625 other downstream 439133 10563344 ~ 10572246 (+) True G156399
TU231641 other downstream 574716 10698927 ~ 10700895 (+) False G156414
unassigned_transcript_2617 other downstream 777858 10902069 ~ 10902140 (+) True trnae-cuc_40

Expression Profile