RNA id: XM_043224482.1


Basic Information

Item Value
RNA id XM_043224482.1
length 2553
RNA type mRNA
GC content 0.46
exon number 17
gene id tpx2
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10092768 ~ 10098638 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATTCAAACTAGCATTCTTGCCTGGTTGTTTGTGGAGGAGGGTACGTGTGTCTGTTGGTTCAAGTTTTAGCGGAATTTTCAGGTTGTTATAGGAgccattgttttacaatACTCCGGAGTGAATATGGAAGGGTGCTCTGCTGATGCGTATACCTGGGATGCCCCTTCTCATGTTATAGAGTCTATTGATGATTTTGCATTGGATCCTCAGGATAATGCTGACCAGTGGTTTGAGTTGAAGGCAGCTCCTACAGATGGCATTGTGGAGCAGCTCACCACCCCTTTACGGACACATCCTTTTGATGAAACCCATGATACAGACAGAATTAAAGCTCTATCTCTTATCAAAAAAGATGAGGAGACAAGCTCAGAAGTCCAAGAAAGCACCTCAGCCGAGGTCCCATCTAACATAGTCACATCATGGGGAAATGGCAGAACTACTGCAGCTCCTGCTCAGGGCCAGACATCTCAACCACCTGGAGTGTCCAAACGGCCTGCACCTGGAAATGCAAGGCCTACAACACCACCTCTTGTCAAGAAAAGACGACTAAGCTCAACAGGAGTTGTGCGACGCAGTGGTGCTGGTGCGAGGAGTAGTGTTCGGCTGAGAAAGAAATCAGCCATTGCTTCAAAGGCCTCAAATACTGCTTCTGCCTCCAACATACAACCGAAAAGCACAGAACAGCAAGAGTTGGAGCGCATTGAGGCTTTACAGAAAGAGGTGGCAGAACAGCGGCGTAAGAACGAGGCGAGCTACAGGGCTGCACTGGCAGGCAGTCAGCCTCCTAAGAAACATGTGCTCTCCACCACAATTCCCAAAGAATTTAATTTCCACTCGGATAGCAAGTTGAAGAACCACACGGATGGAGGTTCTGCAGTTGACAACTCTTACAAAGAGATGGATTTCACCTCTCAGCTCCGCAAGCACCCATCTTCCCATCTGAAGGCTCCAAAGGGAACAACCATTCCCAAGCCCTTCAACCTTTCCAGAGGAAAGAGGAAGCTTGATGAGACGGTAGCCTACGTGCCAATGGCCCAACAGATTGAACAGTTTCAGAAACTCACTCCCACTCGCTATCATCTGCGTAGTAGGCAGAGCCAGGCAAGAGggCCTTCACCAGTGAAGGCTGACAAGCTAAAAATCACATACCCCAAAACACCACAGCTAATGACTAGCCAGAGACATCGTCCCACAATGGTGAAAAGCACCGCAGAAATTGAAGCAGAGGAAATACAGCAGTTTAAGTTCAAACCTCTAGAACTCAACAGAAAGATTCTAGAAGGAGCTTTGGTTCCTAAAAAGCCGGATAGCAAAGAAGTTACCAAGCCTGAGGGTTTCCAGCTGGAGATTGAGAAGCGACTTCAGGAGAGGCAGGCAAGTAAGAAGCCCGAGGTAGAAGAGGACAACTCGTTCCATCCCAGACCTCTGCCAACTCGAATTCTGAAGGAAGTTGTGGGTGTCCCTGAGAAGAAGGTTCTGAATCCTACTGTTCCAGTATCGCCAGCATTTGCTCTTAAAAAACGTGTGaaaatggaaaggaaaaaagaagagGAGAAGCCTCCTGCTCCAATTAAGGCACTTGCTATGCCCCACTTCCTACCCTTTCAGCCCAAACTGCCAGTCAAGAGCCAGGTAGAAATGTGCCCTTTCTCATTTGAGGAACGGGATCGTGAACGTAGAGAAATTAAGGAGAAGAAACTGgaagaaatgagaaatgaggagGTATTTAAGTTTAAGGCCCAACTCCTTCCTGACTTCCATGAAGTGCACCTTCCTGATGTAAAGAGAATAGAGCCCACCAAACCTGCTCCTTTCAAGCTGAAGGTTGATGAACGAGGAGCTGCAAAGAGTGAACGCTGGGAGCAGATGATAAAGGAGGAGTTAAAACAACAGGCCGAAGCAGCGTGTTTTAAGGCACAACCAAACAATGTAACGCACAAAGAACCATTTGTACCGAAAAAGGATAATCGCTCCATCTTGGCCAATACTACTAATTCTTCAGTTCCTGAGGGATTCCAGTTGGCCACAGAACAGAGAGCCAAGGAACGTATGGAGTTTGAAAAGGAGTTAAGTGAGAAGGAGGCGCAGAGGGTCCGTGTTCAGGCACAGTGGGCAAGAGAGCGAGAGGAGCAGGAAAAAGAGGAGATTGCAAGGCTGCGACAGGAACAGGTGCGCAAGGCCCAGCCAATCAGACAGTACAAGCCACTGGAGTTGAAAAAGAGTGACGTGCCTCTTACAGTGCCCCAGTCTCCAAAGTTTTCAAATCGTTTCCGCTTTTAAATGCGTAATACAATTACGTTGACTAAACTGTAcatagttttaatgtttttggtcTTTCATGTCTCTCTATGATGTCTAAACATTTGAGTAGTTTTTATCCATCTCTGGCTGATGCATTAAGCCTTTGTGGTCAAGTAAAAAATTTTACAGTTGGATTTTGACTGCCCCagctaatttgttttatttcttcttacTTTTGTATAtgactttgtttttctgttcctTTCTTTTGAGACTTCTTCaataaaggacatttttttttagtgcaaaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231264 lncRNA upstream 3056 10070780 ~ 10089755 (+) False plagx
TU231228 lncRNA upstream 98158 9994446 ~ 9994653 (+) True G156142
TU231180 lncRNA upstream 119277 9880762 ~ 9973534 (+) True G156109
TU231273 lncRNA downstream 36217 10134855 ~ 10145461 (+) True G156168
TU231292 lncRNA downstream 63360 10161998 ~ 10163976 (+) True G156182
XR_006247831.1 lncRNA downstream 156148 10254786 ~ 10256406 (+) True LOC122328771
TU231342 lncRNA downstream 165352 10263990 ~ 10346054 (+) True G156217
TU231344 lncRNA downstream 231213 10329851 ~ 10335225 (+) False LOC122328781
XM_043224545.1 mRNA upstream 359 10090427 ~ 10092452 (+) True trappc6b
XM_043224526.1 mRNA upstream 2993 10083795 ~ 10089818 (+) True plagx
XM_043224525.1 mRNA upstream 2993 10083795 ~ 10089818 (+) False plagx
XM_043224527.1 mRNA upstream 2993 10083795 ~ 10089818 (+) False plagx
XM_043224467.1 mRNA upstream 10252 10067463 ~ 10082559 (+) False pan2
XM_043224474.1 mRNA downstream 427 10099065 ~ 10106692 (+) True mylk2
XM_043224539.1 mRNA downstream 9655 10108293 ~ 10116956 (+) True cd63
XM_043224543.1 mRNA downstream 23110 10121748 ~ 10124211 (+) True zgc:56699
XM_043224515.1 mRNA downstream 114205 10212843 ~ 10217601 (+) True slc39a5
XM_043224692.1 mRNA downstream 141673 10240311 ~ 10243841 (+) True taf8
XR_006247902.1 other upstream 257332 9835395 ~ 9835479 (+) True LOC122329332
XR_006247904.1 other upstream 257641 9835096 ~ 9835170 (+) True LOC122329334
TU231143 other upstream 323191 9724218 ~ 9769620 (+) False G156081
TU231564 other downstream 317033 10415671 ~ 10417898 (+) False LOC122328383
TU231621 other downstream 452459 10551097 ~ 10554720 (+) True LOC122329061
TU231625 other downstream 464706 10563344 ~ 10572246 (+) True G156399
TU231641 other downstream 600289 10698927 ~ 10700895 (+) False G156414
unassigned_transcript_2617 other downstream 803431 10902069 ~ 10902140 (+) True trnae-cuc_40

Expression Profile