RNA id: XM_043224515.1


Basic Information

Item Value
RNA id XM_043224515.1
length 1901
RNA type mRNA
GC content 0.48
exon number 12
gene id slc39a5
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10212843 ~ 10217601 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTAAACACTAGAATACTGAGAGGATACTGGAGATCATGTAACGGGATTAGGAGACTGCAAAAAAGTCATGGGCGGACAGAAAGTCTGGACGACTCTGAGCTTTAATCTTCTGCTCTGCCACTGTATGATTTCCGTGATGATACCAGCCATATTTGTAATGGCAACACATGTCCAGGTCGACAAGCTTAGAAAGTCGAATGAAAATCCACAAGTTAAATCTGCACAGGAACACTTAGAGGAAGCTTTTGAAGAGCAGGGCTACTACTTGCAACGGCTATTTCTTCAGTATGGGGAAAATGGGACTTTAAACTATGAGGGTCTGCAGAAGTTGCTAGGAAGTTTAGGTCTCGGAGAGGTCAGTGTCCTGGAGATCCGACATGGTGGAGCGAAGCATTCTTCTCAACCCCAATCCCATTCCCACTCACATGAAGaccatcatcatcctcaaaGGACCACAAACTCCCCTCCACTCAAAGAAAGACCTCACATTAAATCAATCCTCAGTGGATCTTCTGCAGAATGGGGAAACTCAGACTATTTTCCACACCCTGGTCTAAGAAATGAACTGGAAGAAAGTGTGTCACCGCTGACGGACCATCCAACAGAGAAACACCTTCATGGGAATTGTCTAAATGTTACCCAGCTCCTGTGGAACTTCGGGTTAGGCCAAGCATCCCATATCACTCCTTCCCACTTCACCTTCCTCTGCCCTGCCCTCCTGTACCAGATTGACAGCAGAGTGTGTCTGCGGCACACAGAGGAGCAGTCACAGGGAAGCAAAACCAGCGAGGGCTTCCTGAGAGCACTAGGATGGGCTTCCTTGGCACTCTTCGTTATTAGTTTGCCTTCCCTGGTTGCCCTGGGACTGGCTCCCCTGCTCCAACCTTCCATCCTTCAAATCTTCCTCTGCCCGATGGCTGGCATGGCAGTGGGGACGTTATGTGGAGATGCCCTCCTGCACCTCCTGCCCCATGCCATCTTTAATCAGCACATTGAACATCAGGATGCCGTTTTCAAGGGTCTGAGTGTGTTGGGAGGACTTTACCTTCTGTTTGCTTTTGAGAGCCTTCTGGGACTTAAACAACATTTCAAAaatttaaagaaaaggaaacaTGATGAAGAGTCTGGAAGAGAGCTGGACGCACTGCAAGGTACCTCATCAGCCattcagaatgagagttcaggGCATGGCCATTCTCATGGGCAGTCTGGACCAGGGAAGATGGGCCTCAGAAGCATGGCATGGATGGTGGTCATGGGAGATGGCATACATAACCTTACAGATGGACTAGCCATTGGTGTTGCCTTTTCTCAGAGTCTGACTGGCGGACTCAGCACTACGATCGCTGTGTTCTGTCATGAGCTTCCTCACGAGTTAGGAGATTTGGCAGTGCTGTTGGCCGCAGGCTGGCCTGTACGGAGGCTGGCTGTGTTCAGCGTCATCTCTGCTCTGCTTGGCTTTATTGGCGTTTTAACAGGAACTGCACTTGGAAACCAGTGGGCGACACACTCACCTTGGATTCTCACCATCACCGCTGGGGTCTTCCTTTATGTTGCTCTTGCCGACATGATGCCTGAAATGCTTCATGGAGATGCTGGATCTTTGAGTCCTCTGAGGCGCTTCCTCCTGCAGAGTTTGGGTCTGTTGATAGGGGGCGCCATCATGCTTTGCATTGCCCTTTTTGAGGACCATATAGCTGTTAGCCTGGGAGAAATCTAAAGATGTGAAGACTTGCTTAAACGAAATCCTCAGGATGTCACACCAGAAATTTCCTTCCAAAGAGGAGTATTATGTACTTATTTTATCCCGTAATGAACTACTGTGTAGCTATTGTGTGGATATTCTGAAGAAAGCACACTGGATGGATTGCGATAAAAGGGATACAATGACAGAAACTCA

Function

GO: NA

KEGG:

id description
K14711 SLC39A5, ZIP5; solute carrier family 39 (zinc transporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231292 lncRNA upstream 48867 10161998 ~ 10163976 (+) True G156182
TU231273 lncRNA upstream 67382 10134855 ~ 10145461 (+) True G156168
TU231264 lncRNA upstream 123088 10070780 ~ 10089755 (+) False plagx
TU231228 lncRNA upstream 218190 9994446 ~ 9994653 (+) True G156142
TU231180 lncRNA upstream 239309 9880762 ~ 9973534 (+) True G156109
XR_006247831.1 lncRNA downstream 37185 10254786 ~ 10256406 (+) True LOC122328771
TU231342 lncRNA downstream 46389 10263990 ~ 10346054 (+) True G156217
TU231344 lncRNA downstream 112250 10329851 ~ 10335225 (+) False LOC122328781
TU231275 lncRNA downstream 169359 10386960 ~ 10387500 (+) True G156169
TU231277 lncRNA downstream 170267 10387868 ~ 10388626 (+) True G156171
XM_043224543.1 mRNA upstream 88632 10121748 ~ 10124211 (+) True zgc:56699
XM_043224539.1 mRNA upstream 95887 10108293 ~ 10116956 (+) True cd63
XM_043224474.1 mRNA upstream 106151 10099065 ~ 10106692 (+) True mylk2
XM_043224481.1 mRNA upstream 114205 10092768 ~ 10098638 (+) True tpx2
XM_043224692.1 mRNA downstream 22710 10240311 ~ 10243841 (+) True taf8
XM_043225414.1 mRNA downstream 30310 10247911 ~ 10257228 (+) True LOC122329223
XM_043225446.1 mRNA downstream 98484 10316085 ~ 10322007 (+) True LOC122329250
XM_043224717.1 mRNA downstream 112810 10330411 ~ 10363818 (+) True LOC122328781
XM_043225494.1 mRNA downstream 150852 10368453 ~ 10381390 (+) True LOC122329277
XR_006247902.1 other upstream 377364 9835395 ~ 9835479 (+) True LOC122329332
XR_006247904.1 other upstream 377673 9835096 ~ 9835170 (+) True LOC122329334
TU231143 other upstream 443223 9724218 ~ 9769620 (+) False G156081
TU231564 other downstream 198070 10415671 ~ 10417898 (+) False LOC122328383
TU231621 other downstream 333496 10551097 ~ 10554720 (+) True LOC122329061
TU231625 other downstream 345743 10563344 ~ 10572246 (+) True G156399
TU231641 other downstream 481326 10698927 ~ 10700895 (+) False G156414
unassigned_transcript_2617 other downstream 684468 10902069 ~ 10902140 (+) True trnae-cuc_40

Expression Profile