RNA id: XM_043225494.1


Basic Information

Item Value
RNA id XM_043225494.1
length 4357
RNA type mRNA
GC content 0.51
exon number 29
gene id LOC122329277
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10368453 ~ 10381390 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACTGCCTCACCAGCTAAAGACTCACTCATCACGTCTATAATCGCAACACAAGATTGTTGTCTTGGTTTCCCAGCCTCGATTCCTTACTGATGAGGGACTTTCGGCCCGACTGACGCAGGGAGATGGGGGTACTCAATATTTCAGACCAGCCGCCTCTGGTCCAGGCCATATTTAACCGAAATGTGGATGAAGTGAAGTTATTTTTGCACAAGAAAGATGAAGTCAATGCACTGGACCAAGAGCGCCGCACACCTCTTCATGCTGCTGCCTGGCTGGGGGACGTTCATATAATGGAGCTTCTCATCAGCGCCGGTGCGAATGTCAATGCAAAGGATCACGTGTGGCTAACACCGTTGCACAGAGCAGCTGCTTCCAGAAACGAGagGGCTGTGGGGCTGCTGCTAAGAAAGGGAGCTGACGTTACCGCGCGGGATAAGTTCTGGCAGACACCACTGCACATCGCAGCGGCCAACCGAGCCACGCGTTGCGTCGAGACCCTGCTGCCCCATGTGACCAGCCTGAATATGGCCGACCGCACGGGCAGAGCGCCCCTGCATCACGCTGCTCAGAGTGGATACCAGGAGATGGTTAAATTGCTGCTGAACAAGGGAGCCAATCTGAGTGCCAGTGACAAGAAGGACAGGCAGCCCATTCATTGGGCAGCTTACCTTGgACATCTGGAGGTGGTTAAGCTGCTGGTGTCTCAGGGCTCGGATAAGAGCTGTAAGGATAAGCGAGGATACACCCCTCTCCACGCTGCTGCTGCCAGTGGCCACGTCGATGTGGTCAAGTACCTGTTACGCAATGGAGCCGAGATTGATGAGCCTAATGCCTTTGGAAACACTGCTCTCCATGTGGCCTGCTACACGGGACAGGAGGCCGTAGCCAACGAGCTGGTCAACCGTGGGGCCAACGTCAACCAGCCCAACCACCGCGGCTACACGCCCCTGCACCTGGCTGCCGTGTCCACTAATGGGGCTCTCTGTCTGGAGCTGCTGGTCAACAACGGTGCTGATGTCAACATGCAGAGTAAAGAAGGGAAAAGCCCTTTGCACATGGCAGCCATTCATGGACGTTTCACTCGCTCTCAGATCCTCATTCAAAATGGTGGGGAGATAGATTGTGTGGACAGATATGGCAATACTCCTCTTCATGTTGCTGCTAAGTACGGCCACGAGCTGCTTATCAGCACCTTAATGACAAACGGTGCTGACACAGCCAGACAAGGGATTCATGGGATGTTTCCTCTACACTTAGCTGTGCTTTACGGGTCCTCTGACTGTTGTCGTAAGCTACTTTCCTCAGGTCAGCTCTACAGCATTGTGTTGTCAATGAGTAAAGAACACGTGCTCTCTGCCGGATTTGACATCAATACCCCAGACAACTTCGGGAGGACCTGTCTACACGCTGCTGCCTCTGGAGGAAATGTTGAATGTCTCAACCTGCTCTTAAGCAGTGGAGCTGACATGAATAAGAAGGACAAGTTTGGAAGGACTCCTTTGCACTATGCGGCTGCTAACGGGAGGTATCAGTGTGTAGTGGTTCTGATTGGAGCAGGGGCGGGGGTCAACGAGCGTGACCGCTCTGGCTGTACACCTTTACACTATTCAGCTGCATCGACTGCGTTCTGCAGAACGGACCGACCCCATGCCAGCACCCATCAGAACCAGGAGGATGGGGAGAAGGAATCCTTCCTGTGTGTGGAGCATTTGTTGGATAATGGCGCTGATCCATCTCTGTGCAACACTAAAGGATACAGTGCTGTGCATTATGCCGCGGCCCACGGCAACAAACAAAACCTGGAGCTGCTTTTGGAGATGTGCTTCAACACACTAGGAGAAAAGGAGAGCAACGGGTCGGTCAGCCCGCTACACTTGGCGGTGGAGTCGGGTCACTGGGAATGTGTTACTGTGTTAATTGAGTCTGGAGTGTATGTGGATGCCTGTGACCCGGTGGGGCGCTCTGTGCTGTATGTAGCCTCTCAAAGAGGACATGCTCGCTGCGTGGAGCTGCTGCTCTGCCAATCAGCGTCTTGCCTGCTCGCAGAGCACCGCAGCAAATGGGGTCCTCTTCATGTTGCAGCTGCCAATGGCCACTCAGAATGTCATGGATGCTGCTTTGTAGCGAGGGGAGCCGACCTTGTTAATGTTACAGATGCAGAGGGACAAACTCCACTAATGCTGGCAGTGCTGGGGGGACACACTGACTGTGTGCATCTGCTGCTGGAGAGAGGAGCTTGCCCTGATATGAGAGACAGGAGAGGAAGAACAGCCTTACACAGAGGGGCGGTGATGGGTCGGGAGGACTGTATAACCGCCCTGCTGTCACACAACATCTCAGTCCTCAGCAGAGATTTTCAGGGGCGAACCGCGGTCCATCTGGCTGCCTCTTGCGGCCATGCTGACATTCTCTCCAATCTTCTTTCTGCTGCTGACCACTCCCATCCCCACGACCCAATCACAGACCGCCACGGCTACACACCCGCACACTGGGCAGCCTATCACGGTCATGAAGACTGTTTGGATGTTTTACTTGAACTTAAACCATGTAGTATCCAGGAGGGAAACCCCTTCACCCCACTGCACTGTGCTCTCATTAATGGCCATAGTGGTTCTGCAGAGCTGCTGTTGGAATCCAGTGTTTGTAATTCGCTGGTAAACATCAGGGATGCCAAAGGAAGGACCCCTCTTCACGCGGCTGCAGTTGCCGAGGACGTGGCTGGGCTGCAGCTGGTTCTGCGGCACGGAGCTGACATCAACGCCGTGGACCACTCAGGGCGTTCTGCACTGATGGTGGCCGCCGACAACGGTCAAAGCGGTGCTGTGGCCCTGCTGCTGCACAGAGCCAAAGCCGACCTGTCCCTCCTGGATGTGAACAAGAACACTGCCCTGCACTTGGCCTGCAGCAAGGCTCATGAAATGTGTGCCATGCTGATCTTGAAGGAGATCCACAACCCTATCCTCATAAATGCAACCAACAGTATGCTTCAGATgCCCCTCCACATTGCCGCCAGAAATGGTTTGGCCACCGTGGTTCAGGCCTTGCTGAATCGTGGAGCCACAGTGCTGGCTGTGGATGAGGAAGGTCATACGCCAGCCCTGGCTTGCGCGTCCAATAAAGCTGTTGCCGACTGCCTAGCTCTCATTCTGTCAACCATGAAGCCTTCCTCCTCcactcctccatcctcaccgCCGCCTCCCAGCCTCAACCTGCTCAAGCACTGTGGCATCACCGCCGCCTGTCCCCCCCTGCCCAATGGAGGCCTTCGCCATGGTTACGGCAAAGATCGCCATGGTGCTACTATTGGCTTGGATGGCTACTTGACCGAGTAAGGCGTTCTTActcgctaaaaaaaaaaagaaaaaaaaagcgtggTCGCTTGGTTTGGTCCTCTCTACACACCTAGATAAACCTATATGCAATTACAGCCACACATCCCTCCTGTGCCAGTATCAAAGCTTTTCTTCACATCTCAGTAGAGAGCAAACACGAGAGGACGAATTTagctatttatttctatttattttcccCGCTTTCCTTTTCCTCCCACTGCCTGACTcccattttagatgctgtccaTTCAGTATGAGTCTAAAATCTGAATCTAAGCCATCTATTCGAACCAGTATCCATCACTGGCGAGTCAGTCCTTTATTTCTTCTCCATTTGCGGTCGATTCGACTCGGTTCATGTTAGAATTATGCAGCTGTGTGTCTCCATGGTAACAGTGATAATGGATGGGTTTCCATATCATGCCTCCTATTTGCGTGACGCTGTGGCCTTGCATAGGAATTTACAGCCTGCCCTGAGGAACAATTTAAACGGGTTACACTAGATTTGCATGAATTTGCGGGACCATGTATTTGATAGtggtcttgtgtgtgtgtgtgtacgtgtgtttgtgtgcgtgcgtgcacgTGTATGTGTGACATCCACTTTTGCGCAACAGTCCAAGTTTTTCATCCCATACTTGATTATTTCGTTTCAAGGTTTTTATGTGAGGTGCAATCTGATTTAGCACAGAtcaggaaaaaacaaacaacctaACAGAATCATATTGACAGAAGGGAAACCATACTACCTTAAGCCAAAAGACCAATGACCTCCTGAGAGTGGGGTCTGATATTTAACGCTTGTTTACTTGTTAGAGAGAAAAGGGATAGTGTTTGGATGGGTTTTGAGGATGAAAATTCATATTAGGTTTACAATGGAGGCATTAGGTAGTCCAGATCACTGTTTGTAGGTGGGCAGAAGAAAGGAATTAAAAGTGTCATGATTTTGGCcgtttaaacaacattttgaaaacgCTACACTAAGGAAGTATAGAAAGCACAAACATCATTACAGATGCAAACG

Function

GO: NA

KEGG:

id description
K15504 ANKRD52; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231342 lncRNA upstream 22399 10263990 ~ 10346054 (+) True G156217
TU231344 lncRNA upstream 33228 10329851 ~ 10335225 (+) False LOC122328781
XR_006247831.1 lncRNA upstream 112047 10254786 ~ 10256406 (+) True LOC122328771
TU231292 lncRNA upstream 204477 10161998 ~ 10163976 (+) True G156182
TU231273 lncRNA upstream 222992 10134855 ~ 10145461 (+) True G156168
TU231275 lncRNA downstream 5570 10386960 ~ 10387500 (+) True G156169
TU231277 lncRNA downstream 6478 10387868 ~ 10388626 (+) True G156171
TU231594 lncRNA downstream 133602 10514992 ~ 10518751 (+) True LOC122328447
TU231605 lncRNA downstream 138752 10520142 ~ 10520767 (+) True G156387
TU231628 lncRNA downstream 191824 10573214 ~ 10655710 (+) True G156401
XM_043224717.1 mRNA upstream 4635 10330411 ~ 10363818 (+) True LOC122328781
XM_043225446.1 mRNA upstream 46446 10316085 ~ 10322007 (+) True LOC122329250
XM_043225414.1 mRNA upstream 111225 10247911 ~ 10257228 (+) True LOC122329223
XM_043224692.1 mRNA upstream 124612 10240311 ~ 10243841 (+) True taf8
XM_043224515.1 mRNA upstream 150852 10212843 ~ 10217601 (+) True slc39a5
XM_043224055.1 mRNA downstream 34273 10415663 ~ 10427162 (+) True LOC122328383
XM_043224362.1 mRNA downstream 47887 10429277 ~ 10432503 (+) True LOC122328600
XM_043224363.1 mRNA downstream 47887 10429277 ~ 10432503 (+) False LOC122328600
XM_043225421.1 mRNA downstream 66418 10447808 ~ 10449331 (+) False LOC122329231
XM_043225422.1 mRNA downstream 66423 10447813 ~ 10449331 (+) True LOC122329231
XR_006247902.1 other upstream 532974 9835395 ~ 9835479 (+) True LOC122329332
XR_006247904.1 other upstream 533283 9835096 ~ 9835170 (+) True LOC122329334
TU231143 other upstream 598833 9724218 ~ 9769620 (+) False G156081
TU231564 other downstream 34281 10415671 ~ 10417898 (+) False LOC122328383
TU231621 other downstream 169707 10551097 ~ 10554720 (+) True LOC122329061
TU231625 other downstream 181954 10563344 ~ 10572246 (+) True G156399
TU231641 other downstream 317537 10698927 ~ 10700895 (+) False G156414
unassigned_transcript_2617 other downstream 520679 10902069 ~ 10902140 (+) True trnae-cuc_40

Expression Profile