RNA id: XM_043224055.1


Basic Information

Item Value
RNA id XM_043224055.1
length 3434
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC122328383
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10415663 ~ 10427162 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGTTATTGGCACTTTAACGAATCCCGGCCACTGCCTCGGTGTCTGTGCGCGTTGACAGACCGATGAGACTGTTTTGAATAGACTGTCGCTTCGTTTTCAGCGTCTTTGTCACACCGCCCGTGGTAATTAGCGACCGAAGCGGACTATTTTGACTCGAGGAATGCTAGATTAAGTGCTGTCGCAAATGCACTTCTCGTGAACTTCTTTCTCGACCAATCTGTCTTCTTGGTTTGTTACCATGGCTGAGAAACGACGGTCCCCGTGTACCATGAGCCTCAAAGCGCACGCGTTCTCGGTAGAAGCGCTTATTGGCacggagaaaaaaagaaagctggaGGAGGACAATGAGAACTGCTTTGAGGAGGTAAACGATGTGTCGAACCTGACAGAAAGCCCGCAACCCCGGACTGGGAGAACTTGTCCAAGCACCAGGAGTTGCGAGACAGACTGCGCAAGCGACGAATCCCCGGAGTCTGAGGACGTGTTGTTGGATAGCCCACAACCTGCATCCCAAAGCTCGCAGGTCCTCGTGCAATCAGGCACGAGCTCCGGAGAGGAGATGCGCGTGGACCTGCAAGGCTCAGATTTGTGGAAGCGATTCCACGAGATAGGAACCGAAATGATCATCACCAAAGCCGGCAGGCGAATGTTTCCCGCGATGAGAGTTAAGATTGCGGGACTGGATCCTCATCAACAGTATTATATCGCTATGGATATAGTTCCTGTCGACAACAAACGGTACAGATACGTGTACCACAGCTCGAAATGGATGGTAGCGGGAAACGCCGACTCTCCCGTCCCTCCGCGCGTCTATATTCATCCCGATTCGCCTGCTTCCGGTGAGACGTGGATGCGCCAAGTTATAAGCTTCGACAAACTCAAACTGACCAACAACGAGCTCGACGACCAAGGCCATATCATTCTGCACTCTATGCACAAGTACCAGCCCCGTGTCCACGTCATCCGTAAGGAGTGTGGTGAAGAACTCTCACCGGTCAAAGCGGTTCCCACCGGGGACGGTGTCAACGCATTTTCCTTCCCTGAAACTGTCTTCACGACGGTGACTGCATACCAAAACCAACAGATTACCCGTCTAAAGATCGACCGCAACCCATTTGCCAAAGGATTCCGGGACTCAGGGAGAAACAGGACGGGGTTGGAGGCTATAATGGAGACCTATGCTTTCTGGAGACCTCCAGTGAGGACGCTGACATTTGAGGACTTCACGAACATGCAGAAACAGCAAGGAGGGAGCACTGGCACCTCTCCCACTACCTCCAGCACTGGCACTCCATCGCCCTCTGGTGCGACACACCTCCTCTCCCCTTCCTGCTCCCCTCCGACTTTCCATCTGGCACCCAACACCTTCAATGTGGGCTGCAGGGAGAGCCAGCTGTGTAACCTGGGCTTGTCTGAGTACCCCGCATGTGCCAGGAGCAACATGGCTGCCCTGCAGGGCTACGGAGGACTAACCGACGGCTCCTACGGCCGCCTCCAGACCACAGGGGGCGCTGTAACCTCTGCCCAGGCCTCCGATTCCTTCTTGCCTCAGAGGACTTCCTCTCTCATTGCTGCTGGAATGCAGGGAGGGGCTCATGCCTCATTGGCTGCTGGTAACGGCAGCGGCGGCAGTGGTGGAGGCAAGATGGATGCATATGGAAGTCAGCTGGCCTCTTTTCCCGCGTCCCAACTGCAGTACGTTATGCAGGCAGGGTCGAGCTCCGCCTCTGGGTCATCGGCTTCATCCGGCTCCTCCCCTTCCTCCGCCCACATGTTCTCTGGGAGCCATCATCATGTGCAGCAGAGCACATATAACGCCTTTTCCCTTCATAATCCCTACAACCTGTACGGATACAACTTCCCGGCCTCACCGCGCCTGGCTGCCAGCCCAGAGAAACCTCAGGGTGGCTTACTGTGCTCCTCCTCTTCCGCGGGAGCATTCGCCGAACGTCAGTACCTGTCCAACAGCGGCATGGACAGTATGCACATGATCGGCAACCCCGCTGGCAGCCAGCAGGGGGCTGGCAGCTGCGACGGCCGCCAGTATGGCTCGTCTACACAGATGTCCATGCATATGGTTTGAAGCCattgaaaataaaccaaaaacagatcaaaacaccaaacacaaacagctgctgcagttttttttttgctcagctTTACTGGGTTTTCAgagttttattattcaaaatgtctGACACATTGGTGTGAGCAGTTTGCCATTATGACGTTGGTGACACCAGCTGTTCAGTGTGGacttattatacacacacacgccttCGTGTGTGTATCGTCAGACTAAAATGGAGTTGAAGTGTTACTTGGCATCAAAAAGAATGGATATACAAGctaaaaataaccatttcaaGTTGTTGTTGCTGACCCATCTCAACAATGTGCAAAACTGAACTAAATCAACTGAGGtttgatttttacaaaatggaTTCTGATAAGGATTCATATTTGGTGCAATAATGGCCCCTTAAATATCCCACAAGAACAAGAGACAGAACATGAACAAAATGCCCTCATAACTGTGAGCGAATAAGTGTCGTCAGTATTACGTTTTCGTTGTTGATAGTATATATGATGCTTGTTATGAGCTCACTGACTCTATCAGAGATGAGGAGTCTCAGGATGGCAAAGTAAAATCCTCCTGTAATAACAGGGTCTCTGTATGATTCTGACAATCTGTACTGAAATGATAAATCTTTGCCTTTTAGTTTGGAAAAGGCTTAACCATATCCTGAGTGGAACATGACATTTGAGCAATAGTGAATGCACGCAAAGCACATAGGTTTTAAATTGTTGTGTGGATAAAAACCATAGGAAGACAAGGTATATGCTTTGGagtgtttgtaaatgaatatatttaaatgctaagCAATTATATGGCCAGTGTATGTTGAATTTAAATAGTGTGGGAGTAATGAACAATAATGTTTTAGGCTTTTAAGACTGTAAATACAAGTGCCAAGCACATAAAgctcattaaataaacattataagtCCTCTGTatgtttcttgaaaaaaaaaatcaagcatgCTTTGTTGCTTTTGGTTGTGGTTTTAATATGACGTCATGCAGTATATGATGGATGTCAAAACAGAAATGATCATAGATTTGTCTTTCACAACAGAATATTGATCTACATATGtgaatatttatgtatgtttagtTTTACCATACACACAGTTTCTCACATAAAGCAGAAGGATTTAAGTACAAAAACTCaagaaagttgtttttttttgctaatcaATTGCAATCTAACTCATGccctttattttttcctctattATAATCATGGGCTTGAGATaaagagaaagcaaaaaaatatatatttgaaagtcaatatgtgtaaaaataaacgTGTAAAAACAAAGGATTGATCCTGCTGTTCTCTTtgaaataaagaagaaagagaTGAC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231277 lncRNA upstream 27037 10387868 ~ 10388626 (+) True G156171
TU231275 lncRNA upstream 28163 10386960 ~ 10387500 (+) True G156169
TU231342 lncRNA upstream 69609 10263990 ~ 10346054 (+) True G156217
TU231344 lncRNA upstream 80438 10329851 ~ 10335225 (+) False LOC122328781
XR_006247831.1 lncRNA upstream 159257 10254786 ~ 10256406 (+) True LOC122328771
TU231594 lncRNA downstream 87830 10514992 ~ 10518751 (+) True LOC122328447
TU231605 lncRNA downstream 92980 10520142 ~ 10520767 (+) True G156387
TU231628 lncRNA downstream 146052 10573214 ~ 10655710 (+) True G156401
TU231624 lncRNA downstream 239699 10666861 ~ 10674148 (+) True G156398
TU231640 lncRNA downstream 269140 10696302 ~ 10696558 (+) True G156413
XM_043225494.1 mRNA upstream 34273 10368453 ~ 10381390 (+) True LOC122329277
XM_043224717.1 mRNA upstream 51845 10330411 ~ 10363818 (+) True LOC122328781
XM_043225446.1 mRNA upstream 93656 10316085 ~ 10322007 (+) True LOC122329250
XM_043225414.1 mRNA upstream 158435 10247911 ~ 10257228 (+) True LOC122329223
XM_043224692.1 mRNA upstream 171822 10240311 ~ 10243841 (+) True taf8
XM_043224362.1 mRNA downstream 2115 10429277 ~ 10432503 (+) True LOC122328600
XM_043224363.1 mRNA downstream 2115 10429277 ~ 10432503 (+) False LOC122328600
XM_043225421.1 mRNA downstream 20646 10447808 ~ 10449331 (+) False LOC122329231
XM_043225422.1 mRNA downstream 20651 10447813 ~ 10449331 (+) True LOC122329231
XM_043224138.1 mRNA downstream 87817 10514979 ~ 10517143 (+) False LOC122328447
XR_006247902.1 other upstream 580184 9835395 ~ 9835479 (+) True LOC122329332
XR_006247904.1 other upstream 580493 9835096 ~ 9835170 (+) True LOC122329334
TU231143 other upstream 646043 9724218 ~ 9769620 (+) False G156081
TU231621 other downstream 123935 10551097 ~ 10554720 (+) True LOC122329061
TU231625 other downstream 136182 10563344 ~ 10572246 (+) True G156399
TU231641 other downstream 271765 10698927 ~ 10700895 (+) False G156414
unassigned_transcript_2617 other downstream 474907 10902069 ~ 10902140 (+) True trnae-cuc_40
TU231770 other downstream 486742 10913904 ~ 10923988 (+) True G156497

Expression Profile