RNA id: XM_043224467.1


Basic Information

Item Value
RNA id XM_043224467.1
length 4249
RNA type mRNA
GC content 0.49
exon number 26
gene id pan2
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10067453 ~ 10082559 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAACCCGGAAGTGCGTGcttgttattgttttgaatgaagCGAGTAGTATGAGCATATGGATACGAGGATAACCGTATTTTAGAGCAGCACCATTCTCATGATGAACTTTGAGGGTCTGGACCCGGGTTTGGGCGAGTACACGCCTGGCCTGCATGGTGGCCTGGAGCCCGGTCTGGACTCCTCAATGGACCCACGTCTCGACCCAGCACTGCTGCAGGGTGTGGAGCTCGACCCTGACGCGCTGGCTGTTCCCGTGTCTGAATCCATGCACATCGTGGAGGGCATGTACTCCGAGCTGCACAGCGTGGCAGCTGAGGTTGGGGTCCCTGTGACGGCAACACATTTCGATCTGCAGGAGGAGCTGCTGTGGATGGGGAACCATCGGGGACATGCAAGTTCCTTCTTTGGTCCAACAATGGGCCGCTACTCCTCTTTCCAGGGGCACATGACCGATGATATTCGCCACATCCAGAGTATGGACACAGGGGTGCTGTTTCTGACCAAAAACAACCTCAAATGCCTCACTCGAGGAGGTTTAATTATGTTTGATTATACaacggAGGAGGGTGCTGACATGCACAGTTTGATTCTGACTGATAATAACACATTGTTAATGGGGGGTCTGCAAAACTATGTGGCCGAATTGGACCTCACAACAGTACAGGAAACACAAAAATTTTCTCTTGAGGTGCCTGGAGTCGCCATCATGAGGCAGTCCAATCGCTTCTTCTTTTGTGGTCACACATCTGGCaagATGTCTCTGCGGGATCTGCGCACGTTTAAGATGGAGCACGAGTTTGACGCGTTCTCTGGCAGCCTGTCTGATTTTGACGTACATGGTAACCTGTTGGCAGCGTGTGGCTTCTCGAGCCGTGGCCTGAATGGACTGTCATGTGACAGGTTTCTCATGGTGTACGACCTGCGCATGATGAGGGCCATCACCCCACTGCAGGTCCACGTGGATCCTCTTTTCCTCCGCTTCATCCCCACGTACACCTCCCGCCTGGCTATCATTTCCCAAACAGgtcAGTGTCAGTTCTGCGAGCCCACCGGCCTGGCCAATCTGGCTGATATCTTCCACGTCAACACTGTGGGGCAGCTGCTGATGAGCTTTGATGTGTCCTCCAGCAAACAGGCGCTCTCCTTTGGGGACTCTGGTGGCTGTGTGCACCTGTGGTCCAGCGCCCCAGAGGTGTCTTTTAACAGTTACTCCAGGGAGACAGAGTTAGCTCTACCCTGCCTGGTGGACTCCCTGCCCCAGCTGGACTGGAACCATGAACTCATGCCTCTGTCTCTTCTGCCCATGCCCCTCACTAGTACCGAGCctctgctctctgattggcCCACCTCCCTCATCGTGCCCAGCCCCAGACGGGCCCCTCCGGTAGACCCAGAGATTCTTAGGACTATGAAAACTGTGGGCTTTATTGGATACGCCCCCAATCCTAGAACCCGTCCCAGAAACCAGGTTCCTTATAAGATTAAAGACACAGAACTTGAGTATGACAGCTATAATCAGGTTCCAGAATCTCCTATTGGTCGAGATGAGGAGCCGCATCTTTACATGATTCCAAAGAAATACAGGAAGGTCACCATTAAATATTCCAAACTTGGACTGGAAGACTTTGATTTTAAGCACTATAACCGGACTTTGTTTGCTGGTTTGGAGCCTCACATACCCAACGCTTACTGCAACTGTATGATCCAGGTGCTGTACTTCTTGGAGCCAGTCAGGTGCCTTGTACAGAATCACTTGTGTCAGAAGGAGTTCTGTCTGGCCTGTGAGTTGGGATTCCTTTTTCACATGCTGGACTTGAGCAGAGGAGACCCCTGCCAGGCTAGTAATTTTCTCCGAGCTTTCCGTACAATCCCAGAGGCATCGGCATTAGGTTTGATCCTGGCTGACTCTGACGAGCAGACAGGGAAAGCCCGTCTAGGTCGTCTCATCCAGAGCTGGAACCGTTTCATTCTTGCACAGCTGCATCAGGAAACACTGGAACAGGAAGGGCCCCAGGCTTACAGAGGAGCCAGCAGCAGCACGCTGGGTTCCTCCGGGGAGTCTGTGATTGGCCGGTTGTTTGGCTGTGAAGTGGAGAACAGCAGTTTGTGTCGCTGTGGAAAGGAGACGGTTCGCACGTCCTTGACTCTTCTTTTTACCATGCACTACCCAGAGCAGAGCTCTCTAGATAAGACGATAGAGGAATATGACTTTGCAGAAATCCTAAAGAAGAGTATATGTCTGGAACAAAGCACGCAGGCCTGGTGTGAGAACTGTGAGAAATACCAGCCAACAGTGCAGACCAGGAACATTCGCTGTCTGCCTGATGTTCTGGTGATCAACTGTGAAGTGAACAGCGCTAAGGAGGCAGAGTTCTGGAAAGCACAGACCGAGTATGCGTACAACAAAGCTTTAAAGAAAGAAGCAGCTGAACCTCCCAAACCCAAAGAGCCTTTACCAACAGAATGGTGTTTAGAGGAAGAGCTGTGCAGTGTGGAGGGCTTGACCTTTGACACTCAAGCGGAGGACATGAAGCACGTATGGATCCCTCTCAGTCTGAAGATGTGCATCAGTAAGACTCAGGGCCTGGAGGTCAGCAGCCTGTCTGAGGGAGAGGAGCTGACTGAAAGTGAAGAGGCAGAAGGAGCGTCTGTCTATGACCTGGTCGTCACTGTATCTCATATCCAGGATGCTCGGACCGGAGGAAACCTGGTAGCACATATCAAAGTGGGCGAGACATACCATCAAAGGAAAGAGGGAGTAACACACCAGCAGTGGTACCTGTTCAATGATTTTCTGATTGAACCCATTGAcaagGCTGAATCAGCTCAGTTTGATGTTAACTGGAAGCTTCCTGCTGTTCTGTACTATGTCAAGAGGAACTACCATCCCAAGTATGATTTACGAATTAAGAACCCTATTGATGCCAGCGTTCTGCTGACGGAGGCCTCGTTGGCACGGAAACAGAGGAAAAGTCACGCCACCTTCATTCCTCTAATGGTGAGCGAGATGCCGCAGGCTGCAGACCTTGTTGGATTGGATGCTGAATTTGTCACACTCAACCAGGAAGAGGCAGAACTGCGCAGTGACGGGACCAAGTCCACCATTAAGCCCAGCCAGATGTCTGTTGCTCGTATCACATGCGTGAGAGGCCAGGGACCCAATGAGGGAGTGCCGTTCATTGATGACTACATATCAACACAGGAACAGGTGGTGGACTACCTGACCCAGTACTCTGGTATCAAACCCGGAGACCTGGATGCAAAGATTTCCTCTAAACATCTGACTACTCTGAAATCTACATATCTGAAATTGCGCTTTCTTATTGACACTGGCGTTCGTTTTGTCGGCCACGGCTTACAGAAAGATTTCCGGGTCATAAACTTGATGGTTCCAAAAGAACAGGTGATTGACACCGTCTACCTCTTCCACATGCCTAGGAAACGAATGATATCTCTACGTTTCCTCGCGTGGTATTTTCTCGATCTGAACATTCAGAGCGAAACTCATGATAGTATCGAAGATGCACGGACTGCTCTTCAGTTGTACAGGAAGTACCTGGAACTGAGTCATAACGGAGGGCAAGAAGAGTTCCGGAAGGTTCTCAAGGCTCTCTATGAGAAAGGACGCAAGCTAGATTGGAAAGTTCCAGACATTGACTCTGCAGATGGTCAAGGTAGCCCAAAAAGTACAGCCGTGTTTCCCTCTGTGATGGGGTTATGATTAGACCCGTGTTGGTTATATTTCTGCCAAACAGATGTCAGCTCAGCAGTCATTTCAGTTCTCCTCTAACATGCCTTGAGCCAAATTACACCTCTTACGGTGTCATTATCATTAGatgaaataatgataaataatctGAAATAAGGCTTGTTATAATGTGTTAGAAatgtctcttcttttttttttaattaaaataaaaatgtaaatgttaaaacatttcattatgtGAGGGTTTTCTCCGCTGCTCTGTGTAGCCTTTAAGTGGTATTAAGAACAATATACATAAGCAacaggaaaaaatgttttcaggaCAGAGACCCGATTTAAAAGACAATAACcaagtgtttgtttgcttgcGTTTGATTCCAGGGTGGCTTTTTCACCAAGGTATTTATATTGTGTCAAAAACTGCACTTATACAGAATATGAATTACTGCACAGAAGATTATGAATTACGGTGTCGTTTTCTATATTGTATATGTACACTTTTGTAATGTGGCAGCTGAATAAAGACTTTTGGATAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231228 lncRNA upstream 72810 9994446 ~ 9994653 (+) True G156142
TU231180 lncRNA upstream 93929 9880762 ~ 9973534 (+) True G156109
TU231179 lncRNA upstream 144238 9922141 ~ 9923225 (+) True G156108
XR_006247821.1 lncRNA upstream 179084 9885045 ~ 9888379 (+) True LOC122328703
TU231169 lncRNA upstream 252154 9813217 ~ 9815309 (+) True G156098
TU231273 lncRNA downstream 52296 10134855 ~ 10145461 (+) True G156168
TU231292 lncRNA downstream 79439 10161998 ~ 10163976 (+) True G156182
XR_006247831.1 lncRNA downstream 172227 10254786 ~ 10256406 (+) True LOC122328771
TU231342 lncRNA downstream 181431 10263990 ~ 10346054 (+) True G156217
TU231344 lncRNA downstream 247292 10329851 ~ 10335225 (+) False LOC122328781
XM_043224519.1 mRNA upstream 9990 10053646 ~ 10057473 (+) True nemp1
XM_043224548.1 mRNA upstream 14005 10049940 ~ 10053458 (+) True si:dkey-126g1.9
XM_043224536.1 mRNA upstream 26110 10037867 ~ 10041353 (+) True armc1l
XM_043224537.1 mRNA upstream 26110 10037964 ~ 10041353 (+) False armc1l
XM_043224490.1 mRNA upstream 61817 9995806 ~ 10005646 (+) False myb
XM_043224526.1 mRNA downstream 1236 10083795 ~ 10089818 (+) True plagx
XM_043224525.1 mRNA downstream 1236 10083795 ~ 10089818 (+) False plagx
XM_043224527.1 mRNA downstream 1236 10083795 ~ 10089818 (+) False plagx
XM_043224545.1 mRNA downstream 7868 10090427 ~ 10092452 (+) True trappc6b
XM_043224481.1 mRNA downstream 10209 10092768 ~ 10098638 (+) True tpx2
XR_006247902.1 other upstream 231984 9835395 ~ 9835479 (+) True LOC122329332
XR_006247904.1 other upstream 232293 9835096 ~ 9835170 (+) True LOC122329334
TU231143 other upstream 297843 9724218 ~ 9769620 (+) False G156081
TU231564 other downstream 333112 10415671 ~ 10417898 (+) False LOC122328383
TU231621 other downstream 468538 10551097 ~ 10554720 (+) True LOC122329061
TU231625 other downstream 480785 10563344 ~ 10572246 (+) True G156399
TU231641 other downstream 616368 10698927 ~ 10700895 (+) False G156414
unassigned_transcript_2617 other downstream 819510 10902069 ~ 10902140 (+) True trnae-cuc_40

Expression Profile