RNA id: XM_043224537.1


Basic Information

Item Value
RNA id XM_043224537.1
length 1307
RNA type mRNA
GC content 0.45
exon number 7
gene id armc1l
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10037867 ~ 10041353 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGTGCGCTGTTATAAAGTAGCGGTGGTGGTGAGTAACATCCACAAAAATGATGGACGCATTATCAGTAGTCACACAGCTGCGGGACCTCGCATCTGAACCACAGAATCGGGAGGCGATTGTTCAGGACCAGGGTTGCCTTCCAGGGCTAGTGTTGTTTCTTGACCACAAAGACCACAAAGTGCTCTTTGCCACCCTCCAGGCTTTGCGGTACCTGGCTGAATCACCCCGCAACATCAACACCATGAAAAATGAGCTTGGCATGATGGTCAGCCTGGAGACACTAATGGAGAgGACTAGTATGACAACTGATATTACAGACCTTGCAGAAGAGGTGTATGGTGTGTTGACTTCTCAAACACAGAAACCAGCTTGTCAGACTCCAGAGCAACAGAAAAGGAAGAACAAACCCCAGTTCTTCATTAACAGCTCCAACAAGAAGGCTAAATCAGTTACCCTGCATATACAAGGCTTGGATGGGGCAGATcaaagaggtgtgtgtgaggaggCCCTTTTGAGAGTCAAAGGAGTAATTAGCTTCACCTTCCAGATGGCTCTAAAGAGATGTACTGTACGCATCCGTGCCGACCTGCCCACTGAGAGTCTGGCCACTGCCATTGCTGCCACAAAAGTGCTTTCGGCTAAGCAGgtcttgaaaaatgaaaacggaGAAGAGGTTCTCATTCCGCTCAGCACCTCTGGCTCAAAAGTAGAAGAGAATTCCAATCTGCCTGATTACCTGCCAGAAGATGAGAGCCCGGAGAAAGAGCTAGACCGTGCTGTGTCCCGTACTGGTGCTAAACAAGACACCGGTGGCAGCTGGCTGAACACAGCAGCCAGTTTCCTCACTAAAACCTTCTACTGGTAAAGACTAAGTTTCACAGACTTTTCCTAGCTGTTTTGGGACCTCAACATTTTTAAGACAGATCAGCTTAGAAGAGCAAGTTTCACCAATATTGGATCATAAAGCACCAGTGGAAGGTCAGGGAACTGACAAATGGCGTTGGTCAATTTATGAGCAAATGTATCTTGTCACAACTCTGTACTGATATGTAGATGCTGAGATTATGCTGTACATTTATATAGGTTTATGTATTTCCTCCATGTAAGGAACCAAAATTTCCTGTTTTTTGCTGTCGAGTTTGTCTGCTGAATCTTCTTTCCTCCTGATTTCTTGTAAATATTTCCATTGTGTGTTATAAGGGGAAAGTATCTATACTGTGTGTCATCTAACATTGGAAACGActgaaaaacagattaaatgtttaatgctgttttgtgtaaaataaaggtttggaaGGAAGAGTA

Function

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231228 lncRNA upstream 43311 9994446 ~ 9994653 (+) True G156142
TU231180 lncRNA upstream 64430 9880762 ~ 9973534 (+) True G156109
TU231179 lncRNA upstream 114739 9922141 ~ 9923225 (+) True G156108
XR_006247821.1 lncRNA upstream 149585 9885045 ~ 9888379 (+) True LOC122328703
TU231169 lncRNA upstream 222655 9813217 ~ 9815309 (+) True G156098
TU231264 lncRNA downstream 29427 10070780 ~ 10089755 (+) False plagx
TU231273 lncRNA downstream 93502 10134855 ~ 10145461 (+) True G156168
TU231292 lncRNA downstream 120645 10161998 ~ 10163976 (+) True G156182
XR_006247831.1 lncRNA downstream 213433 10254786 ~ 10256406 (+) True LOC122328771
TU231342 lncRNA downstream 222637 10263990 ~ 10346054 (+) True G156217
XM_043224489.1 mRNA upstream 32318 9995797 ~ 10005646 (+) False myb
XM_043224488.1 mRNA upstream 32318 9995798 ~ 10005646 (+) True myb
XM_043224490.1 mRNA upstream 32318 9995806 ~ 10005646 (+) False myb
XM_043224542.1 mRNA upstream 129102 9904223 ~ 9908862 (+) True tbpl1
XM_043224547.1 mRNA upstream 200782 9834324 ~ 9837182 (+) True rps12
XM_043224548.1 mRNA downstream 8587 10049940 ~ 10053458 (+) True si:dkey-126g1.9
XM_043224519.1 mRNA downstream 12293 10053646 ~ 10057473 (+) True nemp1
XM_043224466.1 mRNA downstream 26100 10067453 ~ 10082559 (+) True pan2
XM_043224469.1 mRNA downstream 26100 10067453 ~ 10082559 (+) False pan2
XM_043224467.1 mRNA downstream 26110 10067463 ~ 10082559 (+) False pan2
XR_006247902.1 other upstream 202485 9835395 ~ 9835479 (+) True LOC122329332
XR_006247904.1 other upstream 202794 9835096 ~ 9835170 (+) True LOC122329334
TU231143 other upstream 268344 9724218 ~ 9769620 (+) False G156081
TU231564 other downstream 374318 10415671 ~ 10417898 (+) False LOC122328383
TU231621 other downstream 509744 10551097 ~ 10554720 (+) True LOC122329061
TU231625 other downstream 521991 10563344 ~ 10572246 (+) True G156399
TU231641 other downstream 657574 10698927 ~ 10700895 (+) False G156414
unassigned_transcript_2617 other downstream 860716 10902069 ~ 10902140 (+) True trnae-cuc_40

Expression Profile