RNA id: XM_043224490.1


Basic Information

Item Value
RNA id XM_043224490.1
length 3217
RNA type mRNA
GC content 0.44
exon number 15
gene id myb
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9995797 ~ 10005646 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTTTGTCTGATGGATCTGTTTACAATATCGCACACTCCGTAGAGAGCTTAATATCGGCACTTCCTCCTCGAAGAGGAGCTGACAGCACTCCACTTCAGCACACTTGAGCCGAGCGCACTCACCATCATTTCTCTACCCTCTTCTTGAGCAGCGGGATGGCGAGGAGGCACAGACACAGTGTTTACAGTAGCGacgaagatgatgatgatgtggaGATTTATGATCACGACTACGATGGTCCTCATGCCAAGACAGGAAAACGCCACCTCGGCAAGACACGCTGGACCCGTGAGGAGgATGAGAAGTTGAAGAGGCTGGTAGAGCATCATGGCTCTGAAGACTGGAAAGTCATTGCCAGCTTTCtgcctaatCGCACAGATGTTCAGTGTCAGCATCGATGGCAGAAAGTTCTCAACCCAGAACTTATCAAAGGACCCTGGACTAAAGAAGAAGACCAACGGgtGATCGAGTTGGTTCAGAAGTATGGCCCCAAACGTTGGTCTGTAATTGCGAAGCACTTAAAGGGCCGGATTGGGAAGCAATGTAGAGAGCGCTGGCACAACCACTTGAACCCTGAAGTGAAGAAGACCTCCTGGACTGAGGAAGAAGATCAGATCATCTACCAGGCGCATGAGAAACTTGGAAACCGATGGGCCGAGATTGCCAAACTACTTCCGGGCAGAACCGATAATGCAATAAAGAACCACTGGAACTCCACGATGCGGCGGAAAGTCGAGCAGGAAGGCTACCTGCAGCACGCCGCTAAAGTCAGCCCCACTCCGCTAAATAACAGCTACGCTAAATCTCACCTCCTGAACTACAATCAGACAACAACCAATACATCCATGCCCGCCTCTTCCATGAGCAATCAGTATCCATATTACTCACTACTGTCTGACTCACAACGGGTGCCATTTCCACTCGCTGTTCAGTTGAACATCATGAACATTCCTCAGCACGGCACAGCTGCTATCCAGAGACACTACAGCGAAGAGGACcctgagaaagaaaagagggTGAAGGAGATTGAGATGCTCTTGATGTCAACAGAAAACGAGCTGAAGGGACAGCAGGCACTAccaATCTCCATGAACGGCTACGGTGGGTGGAACCGTGGCTCTTTGAAGGACAGCTCAGTTGGTGTGGTGGTTTCAGTCCCGGCTCCATTCCAAGAGCAGGGATGCCTTCCAGAAGAAAGCGCTCATGGCAACACAAACAGCCCAAACAATGACACCAGCTCCTCTTTACCGGAGTTCATTGACGCTATTGATTCGTTCTTTAATGCATCCGTGAGCCCAGACTCAGACAGTCAAAACTTACCTGTTACACCTTCCCCTGTCTGCTCCCAGAAAGCACTGCAGCAAGACCTTGCTCTTCGGCCTCAGAAGGAAAATGAGCTGTTCAGGACCCCGAACCTGAGGCGTTCCATCATGGAGTGCTCTCCTCGCACACCCACTCCATTCAAGTCCACGCTGACAATGCAAGACACCAAATACGGACCATTAAAAAGGGCCCACAGTCCTTCACTGGACTCTGGAGTGGTTGGTGTTATAAAACAGGAGCCTCAGGAGTGTGAGATCAGCAATGGGGGGGTGCACCTGGACCAGCCCCCCCTAAAGAAGATCAAACAGGAGGTGGAGTCAGCTTGTCTGCAGTGGGAGGGGCAAGATCTTCACACCCAGCTGTTCCCATCCAGTGGCTCCACCCATGACATGCCTGATTTGTTGACTAGCTCTGTGCTGATGCTTCCAAACGCAGAGAAAACTGAGGACGGACACAAAGCCCAGCTGCCCCGCAGACCCATGGGAAGCCCTATGCAGcagTTGAGCACATGGGAACAGGTGCTTTGTGGGAAGACGGAAGAGCAGATGATGCCCTCCGAAGCCACGCACAAATACCTCAGCAATTATTCTTCGCCAGCACTGGTCATGTAAAGAGACAGATAGAACGAGACAGAGACAAATATAGAAAGGGAAGAAGAGTGAAAGAAGACAATCATTCTGAAAAGAAGTAAAAGAGGAACACTCTTACGTTTGTGATACATTATTTGGGAGAGGCTAAAAGCCATTTTGTAGACTGCACAGTCGATGTTAGTTGCCAATGTTTAAGCTGTGCCGTCATTTGATTCAAGCAACCaaagacatttttcatgttgtgtttttctactttttttaatttcaatttaataatattgtattatatattttgtattatatatggGAAATGAATTCTCTATGTGGGTTCtaattttatggattttaatatAAGGAACAATTTgcagtaatttattattattttgtattaagaataataattaactacGATGGGCGCCTTTGCCAGTGTTTGACCCCAGTATTGCTCACTTCTTAATCGCTAAATGTGTGTTAATTGTAAGGAGTGTGTGTCCTCCTAGCATTATCAAAATCACCCAAAACTAGACAAGATTTGTACTCCGTATCTGTGGGTATCCGACAGAACTGCCCTCGCAGAGATTGTATGTATTTCAACCAAATGCCTAACAGCACTGCTATGTATTCCTGGCCAAAACAAACCGTGCCCAATGCCTAAAAATGACTTTGCCAAGTTTGAAAATTCAAGTTTGCCTAATGTAGATTTTAGGTGATATATCTAGTGTACAAAGGTACTCTGCCAGTTTAGTAGTGTTGCCATTTCAAAAGCGTTTGAGATCGAGACCACAATGTCAAGCTTTCATTGTATTAGCACTATTTCAGGGTTTAGATCAACTATGCAGagatttcaaaagaacaaaaagtgtttgtttgttttttttttcagtttttatatttgctaaataGGGAAAACAAGGTTTACCAAGCATTTTCAAATCAAGGGTTTAAATGGTCACAACTATGCCTTTGAGatgataaaacatttcttgATCATGTTTTCATAAACACTTTTGTATGTCAATTTGTAATCAGATTTACATTGGTATTTCTCGTTTTTGAAACACTGAAATGATTGTTGCTTTTATACCTAGTCAGCTTGTTTTTGATATTACAATCAGCCTTTGATACTAAGATTGCAGTGTCCAATCAAAAGCATTTAGCAATAACGTTTTTGTTATTCGCTGCCTTTTTGTATTAGCTTCAagtacaaacactttttttacactgattatgaacttttcatacattttttttatacaaacttTTATAACTGCCTtgtaaataaagtgtgtttttgaaaaaata

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0035701 hematopoietic stem cell migration biological_process
GO:0001654 eye development biological_process
GO:0009790 embryo development biological_process
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231228 lncRNA upstream 1153 9994446 ~ 9994653 (+) True G156142
TU231180 lncRNA upstream 22272 9880762 ~ 9973534 (+) True G156109
TU231179 lncRNA upstream 72581 9922141 ~ 9923225 (+) True G156108
XR_006247821.1 lncRNA upstream 107427 9885045 ~ 9888379 (+) True LOC122328703
TU231169 lncRNA upstream 180497 9813217 ~ 9815309 (+) True G156098
TU231264 lncRNA downstream 65134 10070780 ~ 10089755 (+) False plagx
TU231273 lncRNA downstream 129209 10134855 ~ 10145461 (+) True G156168
TU231292 lncRNA downstream 156352 10161998 ~ 10163976 (+) True G156182
XR_006247831.1 lncRNA downstream 249140 10254786 ~ 10256406 (+) True LOC122328771
TU231342 lncRNA downstream 258344 10263990 ~ 10346054 (+) True G156217
XM_043224542.1 mRNA upstream 86944 9904223 ~ 9908862 (+) True tbpl1
XM_043224547.1 mRNA upstream 158624 9834324 ~ 9837182 (+) True rps12
XM_043224549.1 mRNA upstream 165616 9822809 ~ 9830190 (+) True sh3bgrl2
XM_043224538.1 mRNA upstream 235189 9758867 ~ 9760617 (+) True irak1bp1
XM_043224514.1 mRNA upstream 290122 9696640 ~ 9705684 (+) True tbx18
XM_043224536.1 mRNA downstream 32221 10037867 ~ 10041353 (+) True armc1l
XM_043224537.1 mRNA downstream 32318 10037964 ~ 10041353 (+) False armc1l
XM_043224548.1 mRNA downstream 44294 10049940 ~ 10053458 (+) True si:dkey-126g1.9
XM_043224519.1 mRNA downstream 48000 10053646 ~ 10057473 (+) True nemp1
XM_043224466.1 mRNA downstream 61807 10067453 ~ 10082559 (+) True pan2
XR_006247902.1 other upstream 160327 9835395 ~ 9835479 (+) True LOC122329332
XR_006247904.1 other upstream 160636 9835096 ~ 9835170 (+) True LOC122329334
TU231143 other upstream 226186 9724218 ~ 9769620 (+) False G156081
TU231564 other downstream 410025 10415671 ~ 10417898 (+) False LOC122328383
TU231621 other downstream 545451 10551097 ~ 10554720 (+) True LOC122329061
TU231625 other downstream 557698 10563344 ~ 10572246 (+) True G156399
TU231641 other downstream 693281 10698927 ~ 10700895 (+) False G156414
unassigned_transcript_2617 other downstream 896423 10902069 ~ 10902140 (+) True trnae-cuc_40

Expression Profile