RNA id: XM_043224957.1


Basic Information

Item Value
RNA id XM_043224957.1
length 4309
RNA type mRNA
GC content 0.49
exon number 20
gene id prkcbp1l
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6603646 ~ 6622410 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAATCAGACGAGGCCTTACATCCTGCTAGTGGGAGGGCAGCCAGTCACGGCCCTGCTCTGATCAGACAGGCCTGAGCTCTGAGTGTGGAGAGGAGAGCCCTCCCTTGTCTAAAGGCTGAGGCTGTCCTCCATGTTTTATAAGTATTGACATTACACTGTTTCAGCCATGCATCCACAGAGTTTGGCTGTGGAGGAAATAAAGACGGAGTCTGATGCGGTTGATGGGATGGAGGTGCCCATGCCACCCaaagCGGCCCCTGATCTAGGATCAGCGGAGCAGGCACTGGCTGCACAGAAGAGGAAAGCACCCAGTCCTCCACATTCCTCAAACGGACACTCTCCTTCTGACACGTCACCCAGTcccacaaagaagaagaagaaaccgGGATTAGTCAGCAACAATAAAGACCAATGTGAGCTAAGACATGGTCCCTTTTACTATGTCAAGCAGCCCGCACTCACCACAGACCCTGTTGATGTTGTACCGCAGGACGGGCGGAATGACTTCTACTGCTGGGTGTGTCACCGCGAGGGCCAGGTGCTCTGCTGTGAGCTCTGCCCGCGCGTCTACCACGCCAAGTGCCTCAAACTGGCCGCTGAGCCTGAGGGCGACTGGTTCTGTCCAGAGTGTGAGAAAATAACGGTGGCTGAGTGCATAGAGACTCAGAGTAAAGCTATGACCATGCTGAACCTGGAGCAGCTGTCCTACTTGCTGAAGTTTGCTTTGCAGAAAATGAAACAGCCAGGGACCGAACCGTTTCAGAAGCCAGTGTCACTAGAACAGCACCCGGATTATGCCGAGTATATATTTCACCCCATGGACCTGTGCACCCTAGAGAAGAATATCAAGAAGAAAATGTACGGTTGCACGGAAGCATTTCTGGCGGACGTGAAGTGGATTCTACACAACTGTATCATTTATAACGGAGGTAACCATAAGCTAACGGCAACTGCTAAAGTTATTGTCAAGATCTGTGAACATGAGATGAATGAAATTGAGGTTTGTCCAGAGTGCTACTTGTCTGCCTGTCAGAAGAGGGACAACTGGTTCTGTGAACCTTGTTCTCAGCCTCATCCTTTAGTGTGGGCCAAACTAAAAGGTTTTCCCTTCTGGCCGGCTAAAGCCCTGAGGGACAAGGACGGTCAGGTGGACGCACGCTTCTTTGGCCAGCATGACAGAGCCTGGGTGCCCATAAACAACTGTTACCTCATGTCTAAGGAGATCCCCTTCTCTGTGAAGAAGACCAAAAGCATCTTCAATAGCGCCATGCAGGAAATGGAGGTCTATGTGGAAAACGTGCGCAAGAAATACGGCGTGTTCAACTACGCCCCGTTCCGGACACCTTACACACCCAACAACCAATTCCAAATGCTGCAAGACCCTAATAACCCTAAAAAAGGCACGGTGAAGCCTGAGAAACAGGACAAAGTCAAGTTCAGCTTCGACATGACCGCATCTCCCAAGATGCTCTTGAGCAAGTCGGTGATGTCAGGAGGGGCGGGGCGGCGGATCTCCGTGACAGAAGTGCCCAGATCACCAATGAGTACCAACTCTTCGGTCCACACGGGGTCAGACCTCGAGCAGGACGAGCGAGGGGCGAGAGTGTCATCGAGTCACTATAGCGGCGGTGAAGACTCTATGGATTATACAGCGTCTCCTGCGTCTCTAAAGACTAGCAACAGCCCCAAGCCTCTTCTGCCCACGCCGGTCAAACAGGAGAGGAGTTCAGGCACTGGAGGCATCCTCAACCTCAATCTGGATCGCGTTAAAGCCGAAATGGACCTGAAGGAGTTGAGTGAGAGTGTactacagcagcagcagcagcaaggGACGTCGGTTCTCCTCACCTCTCCCAAAAAACCTACTAGGAGTTTGGATAAAACTATAGAGAGCTGCAAAGCTCAGCTGGGAATCAACGAGATCTCAGATGATGTGTGCCACGGTGTTGAGCACAGTGACTCGGACGACTCTGACAAATCTGACTCCAGTGACAGTGAATATGTGTCTGAGGATGAACAGAAGCCCAAGAACACTAACCACAACAACAGTGTCCACAAAGACTCCAAAAAGAGACCCAGAACTCCATCCGCTCAAGGACAAGACCAAGACGATGCCCCATTGACAGCTGGAGGAACACCGGGTACAGACAAGAAATCCTCCGATCCCCAGACCAAAGAGAAGTTAAGTGTTGGTGGGGATAAAGACccccaggagaagagcaaacccCAGCAGCAGAGCCAGAAGGAGAGGTCTCAGCCTGGGCAGGACAGTCGGCCTGCTGGATCAGAGCTGGATGTGGACTCTGACTCCGAGCGAGAGCTGGTGATTGATCTCGGTGAAGAACAAGGTGGGAgggaaaagaagaaagccaAGAGAGAGACCCCGTCAGCCCCCACCTCCGCAACTAAAGATCAGACAGGCATTAAAACAGATGGTAAAACTACCAGCACATCAGCTCCTTCGTCCACAGATAACACTTCAACGTCTTTAACTCCCTGTCCAAAAGATGCGGTCGCATCAGCGATCAAGCCTCCAGCCGCCGTCACTACTGCATCTACCACTGCCACCTCCACCTCAACTGTTCAAACCACGTCTGCTGTCCCAGTCGCTTCCAATGTGGTGAAAAAACAGCGCCCTCTGCTGCCTAAGGAGAGCACACAGCCGGCCCAGCGGCCTGCGACGTGGAACCCAGCTGGTGGTAAATTCCAGACGTCTCAGAAGGTGCAGAGACAGCAACAACGAGGTGAGACGGTTCCTCAGACTGTGGCCCAGAGCCAAGCGCAGCCCCAGACCTCCGCCAACAACTCCAGCACACGCTACCAGACCAGACAGTCCGTCaaagCTGTTCAACACAAAGACACTTCACCTGTTAACATGGGCTCTGGTACATCCACTTCCTGTCTGACTGGAGACTTCCTCCCCCCTCCGGCCTCTGCCGATGTCGCCGCTGACATCGCCAAGTACACCACTAAGATGATGGACGTGATCAAGGGAACAATGACAGAGATATACAATGATCTCTCTAAGAGCACAACAGGGAACACGATTGCAGAGATCCGGCGGTTGCGGATCGAGATTGAGAAACTCCAGTGGCTGCATCAGCAGGAGCTGTCAGAGATGAAACATAACCTCGAGCTGACCATGGCTGAAATGAGGCAGAGTCTGGAGCAGGAGAGAGAGCGGCTGGTGTCGGAGGTGAAGAAACAGATGGAGATGGAGAAGCAGCAGGCGGTGGACGAGACCAAGAAGAAGCAGTGGTGTGCCAACTGCAAGAAAGAGGCCATTTTCTACTGCTGCTGGAACACAAGTTACTGTGACTACCCCTGCCAGCAGGCACACTGGCCCGAGCACATGAAGTCCTGCACACAGTCAGCCACGGCATCTCAGCAGGAAACCGAAGCAGAAGGCAGTTCAGACACAGCTGGAAAACCTGTAGGACAGTCCCCTAAAACCCAACCTTCACCGAGCGGAGAAAGAACATCACCCGCAAACCGAGGACCTTCCCCTCCCACGGACAACACTAAAGGCAGCTCCTCCGTGGCTGTCTCGTAACCCGAGCGTGATAAAATCTCTTTATCATCAGAACAGTGCCATTCAAAGAGAGTCAGATGTTAACACCAAAGGACATTGACTCGTTTCGAACAGACTGTTCCTTGTTCAGTGTAATCATGATACATGATATGGTGTCACTTCCTGTTCACTACATCCAACAATACATTAGGGCGATGCCTATAAACGTTTGATTCATTTCTACGTACATTTCGTATTTGAATTTGTGACTCGTTTAGTACAAAGACAGAAACACCctttgatataaaatatgcaaCTGTAAAACTGTTGtcctttttttatacatatcaACTTTTGTAAACTTCAGCAAATGTGTTTgatcaatataatttttttctcttaatgtGAAAGATGCACTTAGAAGTGCCTCTGAAAGAGTAAGttcattttatcaaatgaaGAGCGTGTTTGTACAAGGTCAAAAACTTATGGAATATGATTGTTAGTACTAATGGATTGTcactacgtttttttttgtttgtttgtttgtttttgttttttttgaaagattCAAAGATTTAACTCTTTAATATCTTTCACCCGTGAAAGGCTTcttgacaaacaaataaacaaaaacgaGCAAAAGTCTAGAGGAGTAAAGGAAAAGATTATACTTATTGTGggcatgtttctttttttctcttgtctTGTGGACTCTCTTGTTTACATACTGTAAATACAAAAGAATAAGCAGAGAtgatatctgtaaaaaaaataaagtcttcATGAGACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230091 lncRNA upstream 1563 6601409 ~ 6602083 (+) True G155371
XR_006247835.1 lncRNA upstream 121493 6461319 ~ 6482153 (+) True LOC122328814
TU230074 lncRNA upstream 144617 6458558 ~ 6459029 (+) True G155360
TU230045 lncRNA upstream 145837 6438508 ~ 6457809 (+) False LOC122328815
XR_006247836.1 lncRNA upstream 149043 6453423 ~ 6454603 (+) False LOC122328815
TU230092 lncRNA downstream 13471 6635881 ~ 6637488 (+) True G155372
TU230223 lncRNA downstream 80763 6703173 ~ 6705526 (+) True G155454
TU230224 lncRNA downstream 81101 6703511 ~ 6707259 (+) True G155455
TU230221 lncRNA downstream 97960 6720370 ~ 6723864 (+) True LOC122328803
XR_006247833.1 lncRNA downstream 98046 6720456 ~ 6722243 (+) False LOC122328803
XM_043224006.1 mRNA upstream 5114 6592602 ~ 6598532 (+) True si:ch211-220i18.4
XM_043225108.1 mRNA upstream 14045 6525611 ~ 6589601 (+) False plxnb1a
XM_043224761.1 mRNA downstream 444 6622854 ~ 6633347 (+) True mapre1b
XM_043224765.1 mRNA downstream 18468 6640878 ~ 6708667 (+) True lama5
XM_043224766.1 mRNA downstream 18468 6640878 ~ 6708667 (+) False lama5
XM_043224348.1 mRNA downstream 108406 6730816 ~ 6772986 (+) True soga1
XM_043223976.1 mRNA downstream 675950 7298360 ~ 7305534 (+) True tcea2
TU230095 other upstream 8911 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU229052 other upstream 2907008 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 2907008 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 3594036 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 3594168 2995169 ~ 3009478 (+) False rbm10
TU230359 other downstream 603584 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 676869 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 1709331 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 1865676 8488086 ~ 8488641 (+) True G155799
TU230843 other downstream 2404098 9026508 ~ 9033098 (+) True lzic

Expression Profile