RNA id: XM_043223976.1


Basic Information

Item Value
RNA id XM_043223976.1
length 2606
RNA type mRNA
GC content 0.43
exon number 11
gene id tcea2
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7298360 ~ 7305534 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGATGAATAAGCTCTCTACAAATACACTTTTAGGTGGAAAACTGTAGGTTAAGTCAACAAACGATATGGTTAAATTTCTGCTGTAGCTATTTTCTAGCTGCGTGTGTTAAAGGGCAGACTCTTAAATGAAACTtgtaaaaactttaatattaaattaaattaaaaggcaCTTGGTCTACTACCAAGACAAAATGAGTTGTTTCCGAAATGTTTGTACGAAAATGGCCTGGTCCAAAATATCAGAACTGTTAGAAATACTGTTTCACGTTATTTAACTGGTTTGCTGTTGACTCCAATTCCCAGAACACCCTGCTTCAAGAATCAATGGGCAGTTCGAATCATTTCAAAgaatcggttcttttgaacaGGGCGTTCAAAGAACCGCTtctaaaaaactattttttttttaaattaggtaCATTTGTAATACAAGTAAATTTGTCATCAGATCATCAAAGACACCTCGGCGTGGCCTGTAAAATGTCCTAAAACTCTATGATAATCACtgcaaattattcattaaaacgtGTTTATTGTAATTCCACGTGCCTAGTTCAGTTCGTTGCAGAGCATGATTTATCTCCTAACACATTTGCGTTTGTAACGTTGAGAAATCTGCCATCATATTAACTCCTAAACGTTtcgaatatataaataatttgtaacatTGCCACTATTAAGGTAACTTACTGCTCGCGCCGTCAGCTCACTTTTCGCGCTCAATGCGAGtttaacatctaaaaaaaagatGCGGTTCTTGTGAGTCGGCAAAAGTGACTCGAGAACCGCTCTTACCGATTCAGTCTGATTCGCGAATGAATCGCTTGTCCCGGAACAGGCTCGTTTGATTCCGTGAAAAGATTCAACCAAAAAGAACGACTCGCTCGCGATTCGAACGGCGATATACAACATTCTAGAGCGGAGAGAAAGGCAGCGGATTCCTCTCATACTGCCACtaaaagagacacacacagagacgggCGCATTTTCCCCACATAAATGGAGGCACGGCCATCGGGCGCCATCAAACAGCCCTAAACCTGTAAACATGGTGAAGGACCAAGAAGTGGAGCGCATCGCGAAGAAGCTGGACAAAATGGTGCATAAGAAAAACACTGACGGTGCCATCGACCTGCTCCGGGAGCTGAAGAACACGAAGATGTCTTTGGAGACCTTGCAGTCCACGCGGATCGGGATGTCGGTGAATGCGGTGAGGAAGCAGAGCTCGGATGAGGAGGTGCAGACACTGGCCAAATCTCTCATCAAGACCTGGAAGAAACTGCTGGATGGTTCTGAGGGTAAAgcggaggagaagaaaaaaggaGGGTCTCCTCTCCAGTCCTCGTCTTCTAAAGACTGTCCTGGATCCAGTGACACCAGTAACAAACCGGAGACCCCAAAAACCCCACCCCCCGTCACCCCCAAGTTCACCACCTTCCCACCGGCCCCCGTGACGACGGACAGCGTGCGCACCAAGTGCAGAGAGCTGCTGGTGGCGGCCCTACAGACCGATGgtgATTACCAGACGATCGGCGTAGACTGTGAACACCTGGCAGCACAGATTGAAGATTGTATCTACCAGGAGTTCAAGTCCACTGACATGAAGTACAAGACCAGACTGAGGAGTCGCATCTCCAACCTCAAGGACCAGAAAAACCCAGACTTGCGCCGGAACGTCTTGTGCGGCAACATCTCTGCAGACCGCATCGCCAGCATGACCGCAGAGGAGATGGCCAGCGCAGAGCTCAAAGAGATCAGGAAAGCGCTGACCAAGGAGTCCATTCGAGAGCATCAGCTCTCCAAAGTGGGCGGCACCGAGACGGACATGTTCGTCTGTGGAAAATGCAAGGGCAAGAACTGCACTTACACTCAGGTCCAGACACGCAGCGCAGATGAACCCATGACCACCTTCGTGCTGTGCAACGAGTGTGGAAACCGGTGGAAGTTTTGTTAAAGACTAAAGTGAGCAGGATTCTTCATATGAAGAGATGACCTGAATTCACAGTATAAGgaaattagtttttcttttcagaaaaaacaaacctgatgtcctttttttcatatatataaatatacatgcattttcatAGCTTTGTAATATAGAATGAGTGTTGCTACTTCAAAAAgctatttctgtattttttttttctttttttactggtGTAATATTATTGCCTTTCACGCACTGCCGATAACTTAAGTCAGCTGGCTTGTTCAGTCTTGCTTTGCCTTTTGATATAGAGCTTGTGCCTTTCTGCTCTATGAGTGCCAAGTAATTGCTGAAAGAATTTGTACACATTCATACATATGtcgatttagtttttttttttgttttttttttgtggggaaCATGTGCATTTCATATGTTTATGCACTTTGCAGATGATTTATTTAACCAAATCTTAAATGATTGGTTACTTTTTCCAGAGTTTGGAAAGACTTAAAGGATTATAGTTAATATTTGAGCCTTAGTGTAGGCGGGAGTTTGCTTCTTGTAGAGAACCGGACggggagaaaaaaacagaatgtgGTACATAATTAAAGGTTCATATGTATTGTATGAATAATTGGACTGTTCTGTCTCAGTAAATTTGGCTAAGAATA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006414 translational elongation biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230289 lncRNA upstream 459199 6836963 ~ 6839161 (+) True G155509
TU230292 lncRNA upstream 459616 6836963 ~ 6838744 (+) False G155509
TU230227 lncRNA upstream 476310 6797111 ~ 6822050 (+) True G155457
XR_006247834.1 lncRNA upstream 570150 6725037 ~ 6728210 (+) True LOC122328804
TU230221 lncRNA upstream 574496 6720370 ~ 6723864 (+) True LOC122328803
TU230441 lncRNA downstream 95456 7400990 ~ 7401189 (+) True G155619
XR_006247860.1 lncRNA downstream 561246 7866780 ~ 7868674 (+) True LOC122328944
XR_006247861.1 lncRNA downstream 561246 7866780 ~ 7868674 (+) False LOC122328944
TU230505 lncRNA downstream 614669 7920203 ~ 7921525 (+) True G155651
TU230496 lncRNA downstream 616488 7922022 ~ 7923577 (+) True G155645
XM_043224348.1 mRNA upstream 525374 6730816 ~ 6772986 (+) True soga1
XM_043224765.1 mRNA upstream 589693 6640878 ~ 6708667 (+) True lama5
XM_043224766.1 mRNA upstream 589693 6640878 ~ 6708667 (+) False lama5
XM_043224761.1 mRNA upstream 665013 6622854 ~ 6633347 (+) True mapre1b
XM_043224959.1 mRNA upstream 675950 6603646 ~ 6622410 (+) False prkcbp1l
XM_043224105.1 mRNA downstream 153964 7459498 ~ 7487536 (+) True oprl1
XM_043225219.1 mRNA downstream 378770 7684304 ~ 7765052 (+) False myt1b
XM_043225220.1 mRNA downstream 378770 7684304 ~ 7765052 (+) False myt1b
XM_043225222.1 mRNA downstream 378770 7684304 ~ 7765052 (+) False myt1b
XM_043225221.1 mRNA downstream 378770 7684304 ~ 7765052 (+) False myt1b
TU230359 other upstream 59441 7225994 ~ 7238919 (+) True G155561
TU230095 other upstream 703625 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU229052 other upstream 3601722 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 3601722 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 4288750 2995169 ~ 3009610 (+) False rbm10
TU230667 other downstream 1026207 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 1182552 8488086 ~ 8488641 (+) True G155799
TU230843 other downstream 1720974 9026508 ~ 9033098 (+) True lzic
TU230931 other downstream 1815350 9120884 ~ 9122374 (+) False G155927
TU230934 other downstream 1815350 9120884 ~ 9122393 (+) True G155927

Expression Profile