RNA id: XM_043224105.1


Basic Information

Item Value
RNA id XM_043224105.1
length 3383
RNA type mRNA
GC content 0.44
exon number 4
gene id oprl1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7459498 ~ 7487536 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agagagagagagagagagactgaaagaTACCTAGTGGAGATGTAAGTCGCTGCTGAAGATTCGCAACAACAAGCAAGTGCTTTAGCGCACCTCCCCCTCCCACTGCGCTCGTttagagagaggaaaaaaaaacataaaacatgtttctcCTTTGCTTGAGATACACAGTGATGTGAATATCTGCGTGCTGTTGGAAACAGAGCTCCGAGACTGCttaaaacagaaagaatagCGGAAACAAGAATTCCTCGCGTGCTTGCAGGAGTCGGACGCTTAAGCGATCACACGGCTGCAGTCATGGAGTTCCCAAATGATTCCATCGGCTTTGCTGACCCCAGACACTTCCATCTCTACAACGAGTCCCTGTTCCAGAACAACTTCAGCGCCTTCAACGAGACTGACAGCTTCTTCCCAAGGGGCGTCAAGATCACTATAGCAGTGGTCTACATGATCGTCTGTGTGGTGGGGCTGGTGGGAAACTGCTTGGTCATGTACGTCATCATCAGATATACCAAGATGAAGACAGCTACCAACATCTATATATTTAACCTGGCACTGGCTGATGCGCTGGTTTTGGCTACGCTGCCCTTCCAGGGCACGGATGTGTTTCTTGGTTTCTGGCCTTTTGGCAATGCCCTGTGCAAGGCGGTGGTCTCCATCGACTACTATAACATGTTCACCAGTGTGTTCACCTTGACCGTGATGAGCATGGATCGATACGTGGCCGTGTGCCACCCGGTGAAAGCACTGGACATGCGGACACCCCACAAGGCCAAAGTGGTCAATATCTGCGTGTGGGTCTTGGCTTCAGCCATAGGGGTCCCAGCTATGGTACTTGGAGACGTGGAAAATGACAACGGCATTGAGTGCATCCTGGTTCTCCCGGATCCTCGCAGTTATTGGGACCCAGTGTTCGGGACATGCGTTTTCCTGCTCTCCTTCCTGGTTCCTGTGGCGATCATCAGCGTGTGCTACAGCCTCATGGTGAAGCGCCTCCGTAGCGTCCGAATCCTGTCGGGCTCCAAAGAGAAAGATCGCAACCTTCGGCGTATCACGCGCATGGTTCTGGTGGTAGTCGCGGCCTTCGTCGTGTGTTGGACGCCCATCCAGATCATGGCCCTGGCGCAGTCGCTGGGCTTCAACCTGGGCAGCGTCCAGACCGTGGTGTTCATGCACTTCTGCATCGCCCTGGGCTACGTCAACAGCAGCCTGAACCCCGTCCTCTATGCGTTCCTCGACGAAAACTTCAAACGCTGCTTCCGTGAGTTCTGCCATCCTTCACCGTTCGGCCTCGACACACAGCAGTCGGGCCGCATGCGCAACATCGCACGTGAGGTGGCCTACAACTGCAAGACTGCAGACGGGAACAGTAACCCCGCATGACTAGGCGTGGAGCTGCCCCTGGTCAGCCCTGAGCCTCAACCTAATCCAGGGACAGGAAACTCAAACTCTGAGTTGACTCAGATCACAACACTCTAGCACCACAGTCACCTCCGCCAGGTGGGCGGGGGAAAGGGTTGGGCTAGGAGTGAGGGCGGAGTCAAGATAAATGACACGCCCTTTTAGGGACAAAGGGGCTCACTTTAGTGTCTTAAATGGTTTTGGATGTTCTTGTCCACGGTTTTGTTCTTATTTGAGAATTATTACACTTTGTTGTTCAGTGTTGCAGCCTTGTACAGATGcttttttgtctctctttaCAACAATCAATGTTTTTCTTGAAATTTGAGACTGTAGAATTTCATGGCCTTAAACATACATCTGAACCTATGAATTAAGTGTATCAGTCCTCTTTGTGGTATTGCCAAGTGTTGGACTGTACTATATACACTATTAAGTATTTATAGTGTATAAACAGTATATAGTAAATGGACTGTACTATGTATTATGTAACTATATACAGTTATGACACTGAATCTTAAACTACAGAGACTTGTAAAGCCTGATTGttataaaaaatgatattttttcttGGTCTGACTGTAcaataagcaaaaatattttatatacatgtatgtttgGTAGCACAGactaaagcttaaaaaatacttgtaaagaaatgaaaaggtaTTGCAAAACATTTGCTGTAGTGttatatatgtgcataaaaTGAAGTTAATCATATTCGAGGCTTTGCATTGTTGAAGACGTCAGTCAGCATTACCTCGAATTTTTTCTCGAATGTTTCCGCTTCGCTCTGTATCTTGCTTTGCTATTACATAATGGATTCTTCTCGTTGAGACAGACAACAAAGAGCCAGCATTGTCATGGGTTTACATCACAGACCACTGAATGTGaaaaagactatatatataaattaaatatatatatatatatatatatatatatatatatatatatatatatatatatagaaagtgTCAGTGAAGTATAGATATATTGTACACCTAATGCTTATTCCTGTAAACTTTAACTTGATattgtgattgattgattgtttgtttacttGCTGCTTTGATTGGCTAATCATCTACCTGTACTTGCATATTTATTGACTGGTGGGACCATATTCTGATGGACTGAAATTAAATGCCAGCTAGTGCTATGGACGTTTACACAGCCTATATGGGAAATCCTTTTCTCTTCTACACGCTTATTAAAGAGcagttattaaaatgcatttctatggCTGCAAGGCACTGCTTATGATTAAAAACTCCTACAGCATGTTATTGTGAAAGATCCCAATGATATATCTCAGAATAACAAGCTGATAATGTTGATTTCAGTTGCACTAAAAACTAAGTGAACCCTTGGGTATCTGTATAAATTGGGCTTGGTGGGTCAAACAAAGTCAGTCaggtaaagtaaataaataaataagcttataGTTTTTTATAAGCTTTTTGGTAGCATACTGTAAACTTACACAGTGCAGGGTGGATTTAATAACAGTTTGACCCACCTTTAGTGACAATAACCTCCACAAACATTTCAATTCAACTGCGGATCAGGCCTGCACAACAGTTGGGAGGAATTTTGCACTGCTCCACTTTTCAGGTCAGCAATATTCTTGGGAAGCCTGGTGGCTCTCTTGAGGTCATGCCGAAACATCTCACTCGAATTGAGGTCAGAACTCTGACTGAGCCACATCAGGAGGCgtattttcttctgttgaagcTATTCTGCTGTTGATTTGCTCCTGTGGTTTGGGTCGTTGTTCTGTTGCATCACCCAAGTTCTCTTGAGATTCAAATAGAGGACAGATGGGCTTGTATTCTCCTGATAAACTGggaattcattaattaattttgtcaaTGATAACAAGCTGTCCGGGCTCCAAACCTAGtgatttacactttttttcccaCTCTGCACTTTGAACATTTACACAGCGGGttcaataaatacatgaaactgta

Function

GO:

id name namespace
GO:0038003 opioid receptor signaling pathway biological_process
GO:0045203 integral component of cell outer membrane cellular_component
GO:0001626 nociceptin receptor activity molecular_function
GO:0042923 neuropeptide binding molecular_function

KEGG:

id description
K04216 OPRL1; nociceptin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230441 lncRNA upstream 58309 7400990 ~ 7401189 (+) True G155619
TU230289 lncRNA upstream 620337 6836963 ~ 6839161 (+) True G155509
TU230292 lncRNA upstream 620754 6836963 ~ 6838744 (+) False G155509
TU230227 lncRNA upstream 637448 6797111 ~ 6822050 (+) True G155457
XR_006247834.1 lncRNA upstream 731288 6725037 ~ 6728210 (+) True LOC122328804
XR_006247860.1 lncRNA downstream 379244 7866780 ~ 7868674 (+) True LOC122328944
XR_006247861.1 lncRNA downstream 379244 7866780 ~ 7868674 (+) False LOC122328944
TU230505 lncRNA downstream 432667 7920203 ~ 7921525 (+) True G155651
TU230496 lncRNA downstream 434486 7922022 ~ 7923577 (+) True G155645
TU230509 lncRNA downstream 442197 7929733 ~ 7932056 (+) True G155655
XM_043223976.1 mRNA upstream 153964 7298360 ~ 7305534 (+) True tcea2
XM_043224348.1 mRNA upstream 686512 6730816 ~ 6772986 (+) True soga1
XM_043224765.1 mRNA upstream 750831 6640878 ~ 6708667 (+) True lama5
XM_043224766.1 mRNA upstream 750831 6640878 ~ 6708667 (+) False lama5
XM_043224761.1 mRNA upstream 826151 6622854 ~ 6633347 (+) True mapre1b
XM_043225219.1 mRNA downstream 196768 7684304 ~ 7765052 (+) False myt1b
XM_043225220.1 mRNA downstream 196768 7684304 ~ 7765052 (+) False myt1b
XM_043225222.1 mRNA downstream 196768 7684304 ~ 7765052 (+) False myt1b
XM_043225221.1 mRNA downstream 196768 7684304 ~ 7765052 (+) False myt1b
XM_043225226.1 mRNA downstream 196768 7684304 ~ 7765052 (+) False myt1b
TU230347 other upstream 155140 7299279 ~ 7304358 (+) False tcea2
TU230359 other upstream 220579 7225994 ~ 7238919 (+) True G155561
TU230095 other upstream 864763 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU229052 other upstream 3762860 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 3762860 3694652 ~ 3696638 (+) False ube2t
TU230667 other downstream 844205 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 1000550 8488086 ~ 8488641 (+) True G155799
TU230843 other downstream 1538972 9026508 ~ 9033098 (+) True lzic
TU230931 other downstream 1633348 9120884 ~ 9122374 (+) False G155927
TU230934 other downstream 1633348 9120884 ~ 9122393 (+) True G155927

Expression Profile