RNA id: XM_043229054.1


Basic Information

Item Value
RNA id XM_043229054.1
length 2289
RNA type mRNA
GC content 0.41
exon number 16
gene id LOC122331544
representative False

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 3751873 ~ 3761133 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATGCTGGTCGCTCACTTACGGATCGTCACTTTATAATCCATAATTTCCAGCTGAACATGGGCCTGcttatgtttgcttttgtggCTGTAATTCCAGTTTTATCTGAAGcATTCACTCTGAAAGGTCCTTCTGGTCCTCTTGTCGCTCCTCTGGGATCTTCAGTGGTTTTGCCATGTTATGTTGATGAACGCTTACCAATGGAGGGTCTGAAGGTGGTATGGAGAAGAACAGATTCAGAGACTTTGGTTAATCTGTATCAGGATGGGGAGAGTCAAGCAGAGAAACAGCAGCAGGGTTATCATGGCAGAGCTCATTTCTTTACTGATCAGATTAACGATGGAAACTTCTCCCTCCATCTGGACAATCTGAGAGCTGGAGATGAAGGACGATACACATGTACAGTTCACAGCCGGCAGGAGTCTGGAGAGACCACGGTACTAATAAAAGATGTCGAGCGTTTGCTAGTAACCGGACAGATAAATCTGTATCCCGCATATGACCGCGAGGACGTCACTCTGAACTGCTCTGTAGACTCTCACATCGCACCTGAACACATTGAAGAGGTTTCATGGAAGAAAATGGATGAAGGTGGAGATATTCTAGTTCTGCTCCACCTAAACAATGAGACATTACAAGGTTCATCGGATGAGCAATACAGAGACAGAGTTGAGCTGTTCACTGCCGAAATCCCCAAAGGAAACTTGTCTCTCAGACTGAAGAGTGTCAGACCTAAGGATAAAGGAGTTTACATGTGTCATGTGTTCGCTGGAGAACTTTCAGCCAGCGCAACCGCAGAActggagagaaaagGTTTCTCTGTTTTACACATAATGGTGTTGATTGTCTGCATTTCTGCATCTGGATCTGCACTTCTGCTCTGCTGTCTGATCTATTACACGTCCCAAAAAACAGACCCTGGTGCATCCAGACATGTTAAGATTCTTGGGTTTCTTCATGCATTTATTCCAAATATTATGATGTTTGTGGCTTTTGTCCTCTGGGGGCTTACAGAAGGTTTTCTGTATGAGACGGTCTCTTGCTGTGCAATTTATATTTTGAGGCCTCTGATGTTGATTTATTGCGCACCATTTTTAGAGAAAATGGCagatgtgGCTCTCGTCTCtgaatatgtaatttttatgaTAGTTTATTGTTCAGTTATTTTCAGTCGTGCTTTTGAAATGTCTCAAATAGAACCGGATGGGAACCATGTATATATTAGAAGATTTAATTTCTgggcagtgtttgtgtttggatttaTTATTCCATTCTTTGTCATCTACATTGTTTACATATTGACTAAGGTGAAGAGGAATCCATGCCGCAGAGAGACGTGTAAATGCTTATGGGATAAAGTTGCAGATGTAGCTATTTTCAGCTATTTCGTTCTGCCTTTCTTACAATTCATCCTTACGCCCTTCACTTTGAAACTACGGAGACAattttcagttCGTATTGTTCCTAGTTTtctattttctgtcattttcctGTCTGCGTGGCCTAAACAGACAGAAAAGCTGTTCAAATTTACTCGCTAATATCTTATGGATAATCTACATGTTTATAATAGCTGTTTTGGTGGTCTATTTTTGCGTAAGAGTGCTGATGAGGGATCGAGATTGGAAAGGATGGCTCTGTAtgattatatttcacaaaatactGTGGATGAGCACAATCTACATTGACGTGAATAAAGATCTGGATCTGACCCTCAGCGTGAAGAAAGTATTTCATGTGTTTGGATCAGTAGTTGTGGTTTTGCTGAGCGCTGTTACACTGATGACTGAACTAATACTGAATGCAGTTAACGGAGAACGTGCAGTGGGAGATCTGAGAGTCGTTGTATTTTCATCTGAAAGCATCTTCACGTTTTTTCTGCTGATTTTCATCATGTTTGGACCTTGGTTTTCTAACCTGAAGTGTTTGCAGTGCTGTCAGAACGCCAGTAAAACTCTAGACGATGAATCGGTTCAGAGAAAAGTGGAATCACATGAAATCAATTCTCTCCTAAAGAATGGAGATCCGGAGGCTGGTAGAAGTGATGTTACAGAAGAAACTCAGCCACAAACATAATCAacaatgagagaaaaagagttaATGCCGGTACCTACAGGTATACTGTATGCTTCATGTAACCATGTGCCAAATTGAAAAATTCAATACAAAAGATCAATTTAACATAGAATTCGTTGGGTAAACCTAAAAAGCTATTCCGCTGTGGAAGAAAATTAAGTTATGTGCTAAGATTCTAAGAAAATTCTTAGAAATATGAGCATTTGGACATAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248260.1 lncRNA upstream 23918 3724811 ~ 3727955 (+) True LOC122331631
XR_006248261.1 lncRNA upstream 23918 3724811 ~ 3727955 (+) False LOC122331631
XR_006248263.1 lncRNA upstream 110427 3640895 ~ 3641446 (+) True LOC122331633
TU253115 lncRNA upstream 111857 3638171 ~ 3640016 (+) True G170921
TU253081 lncRNA upstream 126701 3621511 ~ 3625172 (+) True G170903
XR_006248256.1 lncRNA downstream 169076 3928403 ~ 3928769 (+) True LOC122331627
TU253130 lncRNA downstream 171167 3930494 ~ 3931222 (+) True G170934
TU253083 lncRNA downstream 235023 3994350 ~ 3998657 (+) False G170904
TU253084 lncRNA downstream 235023 3994350 ~ 3998286 (+) False G170904
TU253136 lncRNA downstream 253327 4012654 ~ 4013010 (+) True G170939
XM_043229092.1 mRNA upstream 88964 3657812 ~ 3662909 (+) True LOC122331565
XM_043229003.1 mRNA upstream 180020 3566739 ~ 3571853 (+) True LOC122331519
XM_043229086.1 mRNA upstream 355278 3376479 ~ 3396595 (+) False LOC122331563
XM_043229084.1 mRNA upstream 355278 3382180 ~ 3396595 (+) False LOC122331563
XM_043229128.1 mRNA upstream 483955 3261692 ~ 3267918 (+) True LOC122331579
XM_043229125.1 mRNA downstream 3137 3762464 ~ 3774101 (+) False LOC122331576
XM_043229121.1 mRNA downstream 3158 3762485 ~ 3774101 (+) True LOC122331576
XM_043229123.1 mRNA downstream 3158 3762485 ~ 3774101 (+) False LOC122331576
XM_043229122.1 mRNA downstream 3172 3762499 ~ 3774101 (+) False LOC122331576
XM_043229132.1 mRNA downstream 32950 3792277 ~ 3800807 (+) True LOC122331583
XR_006248200.1 other upstream 840172 2877324 ~ 2911701 (+) False LOC122331570
XR_006248201.1 other upstream 840172 2877324 ~ 2911701 (+) False LOC122331570
XR_006248210.1 other upstream 840172 2877324 ~ 2911701 (+) False LOC122331570
XR_006248208.1 other upstream 840961 2877324 ~ 2910912 (+) False LOC122331570
XR_006248209.1 other upstream 840961 2877324 ~ 2910912 (+) False LOC122331570
TU253118 other downstream 214312 3973639 ~ 3974802 (+) True G170923
TU253154 other downstream 345147 4104474 ~ 4105130 (+) True G170953
TU253162 other downstream 409307 4168634 ~ 4169030 (+) True G170961
TU253145 other downstream 422848 4182175 ~ 4185404 (+) False proza
TU253147 other downstream 422848 4182175 ~ 4185404 (+) False proza

Expression Profile