RNA id: XM_043229123.1


Basic Information

Item Value
RNA id XM_043229123.1
length 1863
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC122331576
representative False

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 3762464 ~ 3774101 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTCCTCTGATGTTTCTTTAACTCTCATATAACAAGATGGAGCTGTACATAATCATTCTCACACTTTCCATTGTTCTCTCAACTGATGCACACTTATGGCTCATCCATAAACTGCCACCTGAAAACTGTCACCACCCCCATGAATTACATGGTCCTTGTTCATGGATGACAAGCTCTTctatCCAACATGAAGCTTACCAGCTTTCAGTATGCTCTAATTCAGAAGAAGAGTTTTTTATTGGATATGATGAAGATGAGACATGGCATGCCAACTTTAATCTCAAGACAGGAATACTGACAATACCGATTTTTTCTGGACCTATGGCATTTGCTGAATTTTATGAACGTGGTCTTTCAGAGGTGGCATTTTGCAAAAGCAACTTACACATGTTCATTGCAGATTTGGAGAACCCACCACCAGAAATAGAAGCTCCATTGACATCCATCTATCCAAAGGATGATGTACAGCTGGGTGTTGAGAATACCCTTATCTGTTATGCGACTGGCTTCTATCCTCCATCTGTCAGAGTCTCTTGGAATAAGAATAATATCAATGTGACAGAGGGCATGAGATTAAGCCAGTACCGTCCAAAGAAAGATGGAACTTTTAACATCTTTTCTACTCTTAAATTTATGCCTGCTGAGGGAGATGTTTACAGCTGCACAGTGAAACTTGCAGACCTCAATGTCCAAACCCAGACCAAAATATGGGATGTTGATGTTGAGGTTGCCTTCCCAAGTGTTGGTCCAGTCGTGTTCTGTGGAGTGGCTGTTACTGTGGGAGTGGTGGGAATTGTTGCTGGaattgtctgttttattaaaggaaaaaacTACACCTGACTGTTGAGCTTTTAAAATACCAATTAATTGTATTGGAATTGGGCTTTGAAAACAATGCAATAGTTCACTTGTGTgccattaattaattaatcagttaTAATAATCATCACAACCTTCATTTCAAAATTATCCAACTTGGTGGTACAGAACCAGGGCCCTCATTTATCAATAGTGCGTGAGCGTAAGAACAGTTTCACGGAAATTGTTTCTCAACCCTGGTCCTGGGCCCCCCCCACCAGTgcacataatttactcaactgTTCTTCTCCCAAGTTACGTCTTCCTAAATTTTGGAGAGTACTGCAATGCAACGTAAATCTTTAGATGTTTCAAAACCAGCAGGCCCTGATGGGCCCTAAATTGAAACCTTATTTTTTAAAGCTAGCAGTTGATTTCATTGCCCCTCCTCCAACTTGTATGTTTTACCTTTctcttgttttaaatgaaattccaCTTATATGGAATTCAGCTTTTGGTCCCTCCGTTTAAATGTTGATATCCTACACAGCTAAAAAATTACCTGCTTTTTTCGAATTGCCTGAAAACCACCTCATGCGagcataaacatttttgtgatatttgagGTTTCTGCGAAATTGTCACATATTTTGaattcacaattttaatttGCGCAGTTTGATTTGCGCAATAACGTGGCTATTGTCTCAtctttgtgtgtctctgtgttgtGAGCTGATCAGCATTAACTATGGATCATTAGCAGGGCTATATAAGATCTGTTAATACTACGTTTTGTTATTGCACTCTTGAGTTCTCAGCGGATCCTGCGATCCTGTTACTTGCTTGTCCGAGCTAGATTTTCTGCTGCTTGGATTATTGGCTGCCCATAGCTGGCTACCTGTGCTGCAGATCGGTGCACAAGCTCTGTTTCCGTCACCCTTCGGATTTTAATTGGCTCTTTCACAGTTACTTACAACTTACTTTTAATGTTGTTCAGTGTAACCTATTCAATCTAATATCTTGTTTTAAAtgctgataaaataaaatctattaaaaatcaA

Function

GO:

id name namespace
GO:0019882 antigen processing and presentation biological_process
GO:0044425 obsolete membrane part cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248260.1 lncRNA upstream 34530 3724811 ~ 3727955 (+) True LOC122331631
XR_006248261.1 lncRNA upstream 34530 3724811 ~ 3727955 (+) False LOC122331631
XR_006248263.1 lncRNA upstream 121039 3640895 ~ 3641446 (+) True LOC122331633
TU253115 lncRNA upstream 122469 3638171 ~ 3640016 (+) True G170921
TU253081 lncRNA upstream 137313 3621511 ~ 3625172 (+) True G170903
XR_006248256.1 lncRNA downstream 154302 3928403 ~ 3928769 (+) True LOC122331627
TU253130 lncRNA downstream 156393 3930494 ~ 3931222 (+) True G170934
TU253083 lncRNA downstream 220249 3994350 ~ 3998657 (+) False G170904
TU253084 lncRNA downstream 220249 3994350 ~ 3998286 (+) False G170904
TU253136 lncRNA downstream 238553 4012654 ~ 4013010 (+) True G170939
XM_043229056.1 mRNA upstream 1352 3751873 ~ 3761133 (+) True LOC122331544
XM_043229055.1 mRNA upstream 1352 3751873 ~ 3761133 (+) False LOC122331544
XM_043229057.1 mRNA upstream 1352 3751873 ~ 3761133 (+) False LOC122331544
XM_043229054.1 mRNA upstream 3158 3751873 ~ 3759327 (+) False LOC122331544
XM_043229092.1 mRNA upstream 99576 3657812 ~ 3662909 (+) True LOC122331565
XM_043229132.1 mRNA downstream 18176 3792277 ~ 3800807 (+) True LOC122331583
XM_043229072.1 mRNA downstream 53158 3827259 ~ 3831190 (+) True LOC122331553
XM_043229009.1 mRNA downstream 109394 3883495 ~ 3887335 (+) True LOC122331524
XM_043228946.1 mRNA downstream 158082 3932183 ~ 3939818 (+) True LOC122331511
XM_043229069.1 mRNA downstream 190178 3964279 ~ 3972387 (+) True LOC122331551
XR_006248200.1 other upstream 850784 2877324 ~ 2911701 (+) False LOC122331570
XR_006248201.1 other upstream 850784 2877324 ~ 2911701 (+) False LOC122331570
XR_006248210.1 other upstream 850784 2877324 ~ 2911701 (+) False LOC122331570
XR_006248208.1 other upstream 851573 2877324 ~ 2910912 (+) False LOC122331570
XR_006248209.1 other upstream 851573 2877324 ~ 2910912 (+) False LOC122331570
TU253118 other downstream 199538 3973639 ~ 3974802 (+) True G170923
TU253154 other downstream 330373 4104474 ~ 4105130 (+) True G170953
TU253162 other downstream 394533 4168634 ~ 4169030 (+) True G170961
TU253145 other downstream 408074 4182175 ~ 4185404 (+) False proza
TU253147 other downstream 408074 4182175 ~ 4185404 (+) False proza

Expression Profile