RNA id: XM_043231556.1


Basic Information

Item Value
RNA id XM_043231556.1
length 3803
RNA type mRNA
GC content 0.47
exon number 20
gene id mctp1b
representative False

Chromosome Information

Item Value
chromosome id NW_025048028.1
NCBI id JAEQBD010000373.1
chromosome length 1110666
location 447201 ~ 474314 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATACCAAagcaacttttttaaataatgggcGTGGATGTGCGCCACAGACTGGGGGGAATGTCTCGTTTTGTAAAATCATAAAGGTCTGCAGATGTGCCGTGGAAAAACTTGCCTCTCCATCACTCTACTTCCGCGTCAAACATGCGTTTAACACTCAACGTGTCCTGCTGAGCACAGCAACACTGAAGTAAATGCCATTTGCATGGGTTTGCATGTTTTCTACATTAACCTCACAGAAACATCAGCAGCAGACTGCAGAGATCATATGGAGGGGGACCTGGACATGGATGGTGTTTCTCCATCCCAACCTCAGCATCAGCGGGGCTTGTGGAAATCCTTCCACGGCAGACCCAAACTCGCCGGCAGCCCCAAACTGGGGAAAAAAGACCGAAAGCAAGAAAGCGGGTTTtggatatttaaaaagaaacgaCCGAATGGTTTGGACCGAGCGATATCGTCCTCTCAGCCCAATCTGCACAGCGCGGCAGCCGCTCCGGACGGTGGTGAGAGCGGGAGGACGCGCCGCGGCTTGCCCGAGATGGGTGTCGGAAGGGCGGCCGCGGCAGCCGCGGCGCTCGGCGCGGAGATCCAGATGCTGAAAAGAACCAAACCCACGCTCGCCCAGCTGGTGCAGTCTCAACATAAACCTTCTCTGCCTGGGTCCACAAGCACCGATGATGCTGTGACGAATGACAACGAGGAAGAGATCAGTAAAACTGTGGGCATTAATGCAGCTGGTAAAGGTGGAACACAGCCTTCACTGCCCGCTTCAGCAATGTACCAGTTAGACATCGTgctgaaaaaaggaaacaaccTTGCCATTCGAGACAGAGGCGGAACAAGCGACCCATATGTGAAGTTCAAAATAGCTGGAAAAGAAGTTTTCCGTAGCAAAATCATCCACAAGAACCTTAACCCAGTTTGGGACGAGCGTGTTTGTCTGATAGTGGACAATTTACAAGAGCCTCTGTATATTAAGGTGTTTGATTATGATTTTGGCCTTCAAGATGATTTTATGGGCTCAGCTTACCTGTACCTTCATTCTCTGGAGCTCCAGAGACCTCTTGATGTTCGGTTGGACCTTCAAGACCCTCACTGCCCTGATCAGGACCTGGGCTCTCTGGAGCTGGCGGTCAATCTATTCCCAAGATGTACAGAGGACAGAGAGGCCCTCCGACAGGCCcagcagcagaatcTCCGGCTGTCAGACCTGCACAAGAAGTCTCAGCTGTGGAGGGGCATCGTGAGCATCAGGCTCATCGAGGGTCGTAACCTCATCCCCATGGACCAGAACGGCCTGAGTGACCCCTACGTCAAGTTCAAACTAGGCCCTCAGAAGTACAAGAGCAAGACAATTCCCAAGACCCTGAACCCCCAGTGGAGGGAGCAGTTCGACTTGCATCTGTATGACGAGGAGGGAGGCATTCTGGACATCTCCGTTTGGGATAAAGACATTGGACGGAGAGACGACTTCATCGGCCAGTGTCAGCTGGACCTGTCCAGCTTGAGCAGAGAGAAGACACATAAGCTGGAGCTGGATCTGGAGGAGGATAAAGGTACACTGGTGCTGCTGGTGACTCTGACCGCCACGGTCGCGGTCTCCATCTCTGACCTGTCCGTCAACCTGCTGGACGACCCAGAGGAACGCCAGCAGATCATTAGGAGATATaGTCCATTAAGGTCGTTCTTTAAGCTGAAGGATGTCGGAGTCGTGCAGGTGAAGATCCTGCGGGCCGAGGGGCTGATGGCTGCTGATGTCACAGGAAAGAGCGACCCGTTCTGCATCGCGGAGCTGTGTAACGACCGTCTGCAAACACACACCGTCTACAAGACGCTGAACCCCGAGTGGAATAAAGTCTTCACCTTTAACGTGAAAGACATTCACTCGGTGCTGGAGATCACGGTGTACGACGAGGACAGAGACCGCAGCGCTGACTTCCTGGGCAAAGTGGCCGTCCCGCTATTAAACATCCGCAACAGCGAACAGAAGGCCTACGTCTTAAAAAACAAGGAGCTGACAGGGCCAACAAAGGGGGTCATCTTTCTCGAAGCAGACGTCATCTTCAACGCCGTGAAAGCCAGCTTGCGGACGTTCGTTCCACCAGAGCAGAAGTACATCGAAGAGGAGGCCAAAGTCTCCAAACAGATGCTGCAGCAGAATTTTAACCGAGTGAAGCGCTGCGTCCTCTTCCTCATTACCGCGGGCTCCTACATCAACAGCTGTTTTCAATGGGAGTCCCCCCGTAGGACTTTATGTGCTTTCTTGatcTTTGTGGTGGCGGTGTGGAATTTCGAGATCTACATGGTTCCATtgtctctgctgctgctgctgaccTGGAATTACTTCCTGCTGGCCTCGGGGAAGGAGTCGCGCGAGGGGAGCGTGCAAGCGATGGAGGACCTTCTTGAGGATGTGGATGAAGACTATGACAAAGATGACAAGGACTCTGAGAAGAAGGGCTTCTTGGACAAATTTTATGCGGTTCAAGACGTGATCATAACGGTTCAAAACGCTCTGGATGAAGTGGCCTGCTTTGGAGAACGAGTGAAGAACACGTTCAACTGGTCTGTGCCTTTTCTGAGCTGGTTAGCCATAACGGTGCTATGTGCTGGTGCCATGCTAATATACTATATCCCACTACGATACATTGTGCTGGTCTGGGGTATTAATAAATTCACCAAAAAACTTCGGGACCCATACATCATCGAGAACAACgagctgctggacttcctgtCTAGAGTTCCATCAGATGTCCAGTTGGTTCAATACAAAGATCTCAAACCGGAGTCTTCTCAGAGTCCCATCAGGAAAAGGAAGAACAACCCCGGATAGATCTGTGACATTACATTTCTAAATCAACAGCATCCGAAGCACTGTTCACGTACAAAACACTGTGAATGCTGcaaagaattttaaaaaggagattgttttaaaaagaaagacatatttCTAGCATTATTTATGCAAACTTGCACAACTACAACAGCACAAAACTTAACTgttcattaaaatgtgcttttaattatttatatgtcCATTTTTATTCTGTGCCACTGATTCACAAGAGagatttatgtataaaaaaaaaatgctgcaaaccGGATTCAAACTTGTGTCGCTTACGTGAGCAACGTGGCTCAAAAAACATGTGCCTAACACTTGGTCACGGCTCCAGCAGTCTGTTGAGACTATGTAACATGGTTTCTGGTGCAAAAAAACAGCCTGATAATGTTTCGCTTTCATAGGCGTCTGCATAAttgaatgtaataaatgcaactGGTCTGACCATAGcgttttttcttgaaaaaaacacAGTGAACTTTGCACCTTTGAGGTCACTCTTCAGATCATTTTCCTTGGATAATTATTTTTATCCACAAGCACATATCTTATGGAGAAACTGCATGCTGTGCATCTAAATCGTAAGAATGTATGTGTGCAAAAAGTGACTGTAAATGTACAgtgtggaattttttttatgttgttcttGACGCGTTTACCCATGACAGATGTCATATGCTATGATCACTGTTCATATGCTATGATGAATGATGAAATGGTGTATAATTGCAGTGTTTGTACATTGTGTTGCTTGTTAATGATTTGCCAGTAGTCTATGAGCATGTAACTGTTAAACGGAAATAGTCAAGTTGGAGGAATTATCAGATTTCCAGTTGACAACATTTGTGaacattcaaagaaaaaaaaaatggcatgtttATACAGGGCTGAAACCGACCAATGAAAACCTCTCTCTGTGAACTTTATTTTCCAAAACTataatagacttttttttctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248662.1 lncRNA downstream 9097 436048 ~ 438104 (-) True LOC122333706
XR_006248661.1 lncRNA downstream 9209 436048 ~ 437992 (-) False LOC122333706
TU269063 lncRNA downstream 118974 326812 ~ 328227 (-) True G181325
XR_006248660.1 lncRNA downstream 120478 309544 ~ 326723 (-) True LOC122333698
TU269041 lncRNA downstream 121346 309668 ~ 325855 (-) False LOC122333698
TU269100 lncRNA upstream 33857 508169 ~ 510043 (-) True G181353
TU269106 lncRNA upstream 80178 554490 ~ 555624 (-) True G181359
TU269109 lncRNA upstream 91056 565368 ~ 565875 (-) True G181362
TU269119 lncRNA upstream 104660 578972 ~ 579640 (-) True G181369
TU269121 lncRNA upstream 113094 587406 ~ 587804 (-) True G181371
XM_043231406.1 mRNA downstream 3531 439370 ~ 443670 (-) True tlr8b
XM_043231496.1 mRNA downstream 35434 406237 ~ 411767 (-) True arrdc3b
XM_043231415.1 mRNA downstream 55266 388944 ~ 391935 (-) True cetn3
XM_043231523.1 mRNA downstream 78773 329743 ~ 368428 (-) False mef2ca
XM_043231409.1 mRNA upstream 799 475111 ~ 482879 (-) True sept5b
XM_043231533.1 mRNA upstream 21739 496051 ~ 501726 (-) True acads
XM_043231401.1 mRNA upstream 28266 502578 ~ 507048 (-) False crybb1
XM_043231403.1 mRNA upstream 28266 502578 ~ 504761 (-) True crybb1
XM_043231508.1 mRNA upstream 125001 599313 ~ 601597 (-) True npm2b
TU269072 other downstream 55279 388966 ~ 391922 (-) False cetn3
TU269042 other downstream 121346 257630 ~ 325855 (-) False LOC122333698
TU269094 other upstream 122580 596892 ~ 598645 (-) True G181349
TU269158 other upstream 206756 681068 ~ 682862 (-) False tacr1b
TU269300 other upstream 276632 750944 ~ 754507 (-) True G181475
TU269313 other upstream 314931 789243 ~ 790846 (-) False ved
TU269392 other upstream 475657 949969 ~ 951651 (-) True G181544

Expression Profile