RNA id: TU269109


Basic Information

Item Value
RNA id TU269109
length 350
lncRNA type inter_gene
GC content 0.63
exon number 2
gene id G181362
representative True

Chromosome Information

Item Value
chromosome id NW_025048028.1
NCBI id JAEQBD010000373.1
chromosome length 1110666
location 565368 ~ 565875 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTAGATGTGCAGCAGCGGCGAGTCCGGCGTGGTTGAAGTCCAGTGAGAGCACCATGGCGAATCGAGTCGAGGCCTCGCTGTGAGACGAGCTCACACACCCGAACGAGCGCAGCACCGTAAACACCGCCTGGAGCCGCTCATGTAAGGCTTCCTCCCGCCGTTCCCGCTTGTTTCAGCAGCTCCTGGGAAAACGACTGGCAGGAGGCTGTCTTCCCTGTGCCACTGCGGCCCAAAGCCACCAGCGTCTGGTCCCTCCGCTGACCCACCATAGACACATACACCCTCCTCACCAGAGCCTGCAGAGGACCAGGAGCTTCCCAGGATTCCCAGCGTCTGCTCCGGAGCCCC

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269106 lncRNA downstream 9744 554490 ~ 555624 (-) True G181359
TU269100 lncRNA downstream 55325 508169 ~ 510043 (-) True G181353
XR_006248662.1 lncRNA downstream 127264 436048 ~ 438104 (-) True LOC122333706
XR_006248661.1 lncRNA downstream 127376 436048 ~ 437992 (-) False LOC122333706
TU269063 lncRNA downstream 237141 326812 ~ 328227 (-) True G181325
TU269119 lncRNA upstream 13097 578972 ~ 579640 (-) True G181369
TU269121 lncRNA upstream 21531 587406 ~ 587804 (-) True G181371
TU269152 lncRNA upstream 101890 667765 ~ 668266 (-) True G181397
TU269273 lncRNA upstream 146692 712567 ~ 717373 (-) True LOC122333763
XR_006248669.1 lncRNA upstream 148231 714106 ~ 716498 (-) False LOC122333763
XM_043231401.1 mRNA downstream 58320 502578 ~ 507048 (-) False crybb1
XM_043231403.1 mRNA downstream 60607 502578 ~ 504761 (-) True crybb1
XM_043231533.1 mRNA downstream 63642 496051 ~ 501726 (-) True acads
XM_043231409.1 mRNA downstream 82489 475111 ~ 482879 (-) True sept5b
XM_043231556.1 mRNA downstream 91056 447201 ~ 474312 (-) False mctp1b
XM_043231508.1 mRNA upstream 33438 599313 ~ 601597 (-) True npm2b
XM_043231542.1 mRNA upstream 108260 674135 ~ 682898 (-) True tacr1b
XM_043231529.1 mRNA upstream 157279 723154 ~ 726562 (-) True tuba7l
XM_043231505.1 mRNA upstream 213353 779228 ~ 783680 (-) True purbb
XM_043231396.1 mRNA upstream 223369 789244 ~ 792617 (-) True ved
TU269072 other downstream 173446 388966 ~ 391922 (-) False cetn3
TU269042 other downstream 239513 257630 ~ 325855 (-) False LOC122333698
TU269094 other upstream 31017 596892 ~ 598645 (-) True G181349
TU269158 other upstream 115193 681068 ~ 682862 (-) False tacr1b
TU269300 other upstream 185069 750944 ~ 754507 (-) True G181475
TU269313 other upstream 223368 789243 ~ 790846 (-) False ved
TU269392 other upstream 384094 949969 ~ 951651 (-) True G181544

Expression Profile