RNA id: XM_043243290.1


Basic Information

Item Value
RNA id XM_043243290.1
length 3322
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC122348040
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 13205495 ~ 13209101 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAATTTGGACCAGTTGTGACAAAAAGCTTTGTGTAGCATGTACGCATTATTCCTTAAAACATGTCTCTTCAATACTATCTGAGactGGCATGGGTTGGTTTGACTCTTTCTGTTGTGGTATGCTTGCCTGAAGTGTCAGGAGATGTCACGGGTGATTCAAAAAGCCAAATACAAGAGCTGGAAAGTGTTAATCCACCCATTCAAAATCCAACAAGAGacaattttcaaaggaaaacgGAACAATTTAACGGCAAAGCTCAGCTGCCATGGATCAGCTCTACCTTATACAACCAGAGAAAGAAATTTAATGAGGAAACTGATGCCAAAGGAAGCTATGTTTTCCAAACGGTTCAACAGGAACAAAATCCCTTTAAAGAGAGCCAAATGAACTTTAGTGATATTAATCTGGCCCCAAGGCTGCTGAGGAAAAAAGGTGGAATGCATGCAGCAAATGTGCATAGATCTGGCTCATTTGGATATcaatctatttttaaatcagaaatgcATTCAGACAGTTCACGACCATTAGGACTTAATGAACCTTACATGAGGGAAAATATTCCAACTAATTATATGTCTAGAAGCGCAACTGTCAACCATAATATCAGGCACAAAAGTGATGGAAACGTGCTGTTTGAtaattttcttcaaaacaatGGCCAAAATCAAAACGTGCTGAGGAGAGTTGTACCAGCAAATACATTTCCATCGATTGCTACAGTAAATCAGCATGAGGGAAAACCATCGCCACAAGCTTTTTCTGCTGGGACTGGAGGTATATCTCAAATGTCCTATGAGAATATGAGGGACGTAGCCCTTTCCAAGGTGTTCAAACCTCCAACAATCCTAACACCAGTATCTCCTGCATTTAAAAGACCAAATTCAAATGGAGTTCATAGCACCCTTCCgataaaaaaatctaagctGTTTTCTTCTCCACGTGATCACGTCAAGCTGTCTAATTCTGAAAGGGTTGCCAATCCAAAAGCAAGCCTGCAAAGCGGTGTTGAACATGGAAATGCAAAATTGGCCACGAGCAGATACAATTTCAAGAACATTCAGTTGGCTCAAAATGGTTATCAAAACAGGGGACAAAGTGGTCAGAATGTTGTGTCAGTTGAAACCTTTCGCAATCAAAAGTATGATAATTTGGCTTCAGGAATATCTGCCATCAAGCCTCCAGTGACCAATAATGCCCGCTTTTACTTCCAATCATATGAAAAAGGTGGCATCCAGCTGTCTGAACCGCTCAAAAGGTCAGGTCAAAACACAGACTTGCCCCCACGAATGCAGTTCACAAAGAAAGCCATGTTAATTTCAGAACgtgataaaaatattaatcttcCAGACCCAACAAATCATTCATTAAGGAGGCCAAGTAAGCAAAATGCCCAAAATAGGACACTTCTGAATTCTTTTGGCCAAAGTACTGTACAATCGTTATCCTTTAAACATCATCACGCGCCAGGTTTTGTGCAAGGTAACGCAATGAAGAGTCACGTTCCCAGCGTTAGTCCATCTGTGTTTGGCACTGAGGGTGCATTTAAAAACTCTGGTAAGTCTAGTAGCCGAAACGAACCATATTATCTAACTTCTAAAAAGCCATATGCTTTTAAAGGTTTCACGTTTGTTCCTGAATtgccaaaacaaaaatcaaaaatgcaCTCTGACCAAAGGCCCCTCTTAGAGTCTTCATCTAATGTGGAGTATGCCCCTGCTCATCCACATACTGCCCAAAGTGCACTTGCTCAGAAACCCTTTACACGTGAGAGctccaaaaaaacacttttccagTTCAAGGACACTGAATCAAGCCAAAAAAACCCACTTTATCGGGATCAGAcagattcttttaaaaatggacCTCCACGTGATACCATCTCTTCTATTGAAGGTGTAAGTAACCCGATGCCTGATGCTCTAAAGCACCATGTTGTTAGAGGTCAAGCTGCAGCAATGAAAACATCTCTCTTTGCCACAAATGCTACAAATAATGGAGCTGTTGACAAGGTTCAGTCAAAAACATCTCACTGGTGGACTTCAAGTAGGCTTGCTTCAGCACAGCCCGCTGAATCGAACAAAGATGCATTCCCAACAGTGAGAAACGGCAGTTTTGTTGGATCCAACTTAAATAAAGCATCCATAACATCTAGCAGCCGTCATAAGGGTCCCACATCAAAGCTCATTCTTCCAATTCATAAGTCTTCTCTTATGAACAAAGTGACTGGGTATGCTAAAATCCAGCCGCTTCACAGCAATAGCTTGAAGGGACATGAAAACTCTGCTGGAACGCCACAGACGTATACTGCGGAAAAACTTAGCCCCATAAGAATGAAACCGACCAGCAGTGTTGTGATTGGTAGGCAAGTTAAAGACAATTCAAACCACCAGAAAGTCTATGCCATCCCAACCTCTCACTCTGCAATTTATAGATCTGCTGACGTTAATCATCATAAAACGAATAACTCTGCCAAGTTCACTTTCCAGTCACCCATACACAGATCTGCTGTAAAACCTTCTGGCAAAGCTAACATCCTACAAGCTAATGCTTCAGACTGGAGGACAGGAACGTCTCAAATCTCAGAAGCAGATATCAATCTTAGTGCCGTCGGCGTGTCCCAAGCTTTAAGACCCACAAGCAGCTTTGTAGTTGGAAAGTACATTAATAAGTTTGATAGAACCCCAACCAAATCCAACCTTAACACGTATTCAACAAAATCAGGCCTAAACGATTATAAATCACTTCAGTTTTCTGATATTGTAGGTAGCGCCTCCTTCACCGACGTCAAATTTTATTCTGAAAGCACCACGGCGTCGGAAGAAGTGGATCTCGAAAGTGATCAAAACGCCACTAATTCAATGGAGGAAAGTTTCAAAGAGCTGTTTTTTGACAATTCCTCTATGATCTCGGctttacaaaatgaaatgaatgaaagcgCAGTGGATATACGTGTCCCCGAGTTTATGCCAGCAACTGCTATAGACTTCACCACACTATCATCTCAGCTATCATCCCTTCTTACAAAAGAACCTACTCAACCTCAACCAACTGTCCGTTCCTCTGAGTCGCAGCCGGATCCTGGGAATCATTCCCCATCTACACCAGAGGGTACCATTATAATTCATGAGACAACATTGATACCCAATACTACTTTGCAAGATAAAATGACCTCAGGTTGAGATATGCCTCTTCAAATATTTTGTTGAATGCGCTTCAGTAGTAGTCGACAGACTGCAATGTGAGGTGTTGTTCTCTTCTGTAGGTAGATGGCGCCAGATTTGTCCTCAGactaatttgtattaaatttgtAACTTCTGaga

Function

GO:

id name namespace
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78007 lncRNA downstream 47937 13155179 ~ 13157558 (-) True G52631
XR_006251487.1 lncRNA downstream 283741 12920609 ~ 12921754 (-) True LOC122349737
XR_006251486.1 lncRNA downstream 284901 12919874 ~ 12920594 (-) True LOC122349736
XR_006251288.1 lncRNA downstream 316265 12888598 ~ 12889230 (-) True LOC122348248
XR_006251275.1 lncRNA downstream 327232 12877687 ~ 12878263 (-) True LOC122348179
TU78034 lncRNA upstream 21314 13230415 ~ 13231214 (-) True G52651
TU78036 lncRNA upstream 21314 13230415 ~ 13230959 (-) False G52651
TU78038 lncRNA upstream 26606 13235707 ~ 13236227 (-) True G52653
TU77995 lncRNA upstream 36170 13245271 ~ 13248857 (-) False zgc:194312
TU78050 lncRNA upstream 43260 13252361 ~ 13257363 (-) True G52663
XM_043244271.1 mRNA downstream 58768 13131107 ~ 13146727 (-) True acap1
XM_043245264.1 mRNA downstream 98416 13098440 ~ 13107079 (-) False trip6
XM_043245261.1 mRNA downstream 98417 13098440 ~ 13107078 (-) False trip6
XM_043245263.1 mRNA downstream 98493 13098440 ~ 13107002 (-) False trip6
XM_043245262.1 mRNA downstream 98554 13098440 ~ 13106941 (-) True trip6
XM_043245290.1 mRNA upstream 195 13209296 ~ 13210620 (-) True si:ch73-335l21.4
XM_043245939.1 mRNA upstream 36944 13246045 ~ 13251205 (-) True zgc:194312
XM_043245127.1 mRNA upstream 72793 13281894 ~ 13299383 (-) True ntn5
XM_043245129.1 mRNA upstream 92484 13301585 ~ 13304240 (-) True cnpy4
XM_043245680.1 mRNA upstream 147671 13356772 ~ 13361799 (-) True zpax4
TU77936 other downstream 223699 12976947 ~ 12981796 (-) False LOC122347902
TU77932 other downstream 240569 12964324 ~ 12964926 (-) False LOC122348718
TU77828 other downstream 241428 12962377 ~ 12964067 (-) False LOC122347901
TU77750 other downstream 433058 12770332 ~ 12772437 (-) True G52473
unassigned_transcript_1284 other downstream 522264 12683158 ~ 12683231 (-) True trnar-ucu_9
unassigned_transcript_1285 other upstream 91836 13300937 ~ 13301030 (-) True trnai-uau
unassigned_transcript_1286 other upstream 92740 13301841 ~ 13301934 (-) True trnai-uau_1
TU78220 other upstream 139416 13348517 ~ 13351621 (-) True G52772
TU78218 other upstream 140519 13349620 ~ 13350426 (-) False G52772
XR_006251435.1 other upstream 201482 13410583 ~ 13437648 (-) False chd3

Expression Profile