RNA id: XM_043245261.1


Basic Information

Item Value
RNA id XM_043245261.1
length 3152
RNA type mRNA
GC content 0.49
exon number 11
gene id trip6
representative False

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 13098440 ~ 13107079 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCACTGTAACGTGAAAGTGCGTCGCAGTTGGTGTGAAGGATAAATGTTAAATCGGCTTGCCACGTGACGTCATGCGTCTGGTTCGCTCCACACAGGCCTCTGTCAGCCGCTGCTGGATCCTCCAGGAAAAATGAAAGCGAGGCGAGGCGAAGCAGATGCTCGTTAGACTGGGAGCCCGCAACGTTTTCAAGAGAAGCCTGGTATGTCTGCGCCCAACTGGCTCCCTCCAAGAACCCTGGGTAGCCCAGAAAGAGCCACAACACCAATGTCACACTCTGGCCCCGCTCTCTACAGACCCCCCAAGAAAGGTCTGCCCGACCAGAGGCCCAAATATAACATGTATGACCAGAATGGTGGAACGGGAGGAAACGGTATGCCTATAAGATACATGGCTACTGGACCTTCAGGTGGAATCATGCAACACCAGCATCAAGATGATCGCTCAGGGTCTACTACCTACAACCCCTTGACTTCCCAGTTAGGAGACCGATACTACGCTCCAGGCCAGGGGCCTAAAGAAGATCACCATACATGGAATCCCCGCATGACCAACCACGAACTTCACAATCGGGGACCAGAGAAGCACATCTCTACTATTGATGCAGAGATAGACTCTCTTACATGCATGCTGGCTGATCTGGACAGTCACCCTCAGAGCACAAGCGCACAGTTGTATGACAATGTGCCTTACAGCAAGCACCTCCCTATCGACCGCTATAACCCTCCCAACCAGATGGGGGCTCCTCCATCAAGCAGGCCCTCGATGGGCTACCCCCCTCCACTCCAAAACCAGTACCACCCCGCCCCACCTTACACTTCTTCACCTCAACCAGACTATGTTTACTCCTCCGCCGCCTCGTCCGTCCACAAACCTTACCCCCAACCGGTGCCTGCCTCCTACACCACCGCCTCCACTCCGACCGGCCCGCGCTTCACCGTACAGGTGAAAACAGCTCAACCTGTCACCTATTCTCAGAGCGGGAGGCAGGCAGAGCAAGCTTACACCCCTCCACCACCCCGTCAGCACGCCTCTCGCCCCCCTCAGCAGGACCGGCCGCATTATGAGCCGCAGGGACAGGGCTGGTACCCACCGCCTCCTCCTCCTGTACAGGAGCCCCACGGAGATCCTGCTGCTTATAAGGGAGGATCAGGAAATATGTCAGGAGCGAGAGCTGGCCAGGGACCACCAgtgaaaaagagtcaagaacaAGCGGCAGCATATCAGTCTAACAAGCAGGGAGCAGCACCACATCCAGAGGAAGAGTTGGATCGACTCACAAAGAAGTTGGTGTATGATATGAATCATCCCCCTACTGAGGAATATTTTGGTAGATGTGCTCGTTGTGGGGATAATGTTCTGGGGGACGGCAGTGGCTGTATCGCCATGGAGCAGGTGTTTCACGTGGAGTGTTTCACCTGTATCACCTGTCACGCGCGTCTGAGGGGACAGCCCTTCTATGCACTAGACAGGAAGAGCTACTGCGAGAACTGCTACATAAGCACGCTCGAGCGCTGTTCAAAATGCTCTGAGCCCATCCTAGACCGGATCCTGAGGGCGATGGGAAAGGCTTACCACCCTCGCTGTTTCACATGTGTGGTTTGCGGCTGTTGCCTGGATGGCGTGCCTTTTACTGTGGACGCCACATCTCAGATCCACTGTATTGAGGACTTCCACAGGAAGTTTGCCCCCCGCTGCTCGGTATGTGGCCAGCCCATAATGCCAGAGCCTGGGCAGGAAGAGACGGTGAGGATCGTTGCACTGGATCGCAGTTTCCATGTTAACTGCTACATCTGTGAGGATTGTGGTCTTGTCCTCTCTTCAGAGGGCGAGGGAAGAGGCTGTTATCCCCTGGACGGACACATCCTGTGCAAGAGCTGCAGCGCCCGCCGCATCCAGGATCTTTCTGCCAAAATCTCCACTGACTGCTAATGCCCCCGTCCCTTCTCTTCTTCACAGTTATTCTTCAGAATGTACCGCTATCTAAACGTATACCACCTGGCATTTCTTCCATCCTTGACTTTACATGTCGATCGCACAAATAATATGAAGACGTCCCTCTCAGGGTAGCATAGAgctgaggagagagaaaaaatagcTCTCGTGCTTTTTAGAGTAGTTCCACTGGAAACTGTTTCCTCaaagaacacagaaaaacagGTGGTGAATGAAATATAACGGTGTTTGTGTATAATCCTCagcatatgtgtgtttatgcaaaACGTGAGCCGCGTAAACAGGGTGCATTTCTACCTTTTAGTGAAGCAGTCACTTTTACATCACTAAAATAATAACCTTTAATGGGAATATAGTAACGCGTCACAGTTTCCTCAAACAGTGCCCTAACTCTGCTGGCAATTGGGGTCACTTCATATTTTTCCCCATTCAGATCAtctcttttcttttatcttgtgaaaaacaaacctgATCTCAGCTGGATATCCAATgctcattattttaatacttgaaATCATGATTGTTGAAggatattattactgtatttcgtTTACTGACTTGATATTATCATTACGTCCAGCGCGATTCTAATGATAATTCTGGTAAAAAAAGGTTGGAAAAGTTTTACACGGGCagctgttttgttctgttttcggTGCAGTCTCTAGCTCTacgctgaattaaaaaaaaaaacggttacAAGAGTGTTGTCCGTTAggaataatgtatttaatgaccGCTTTAATGAAGGAAATCTTTAGACGGGTGTGTATTGGATCAAAGTGTTGACAGCAGGGTGGAGTGATGAAAGAAACGGAGAGCAGTTCAGAAACGCAATCTATAGGTTAGATGAATAACAAACGTGGCTTCTTGTTAGAAAACTTCTCTCATCACACCAAGAAACTTAGTCACGATGTTGTTACTAAATATAGACGGATGAATGGTTAAGGGACAGTAAATGGTCAGGTATCAAGGTTACAAGGAGGTGAAGTACGTGAAATGAGAAACTAATTTCAGATCGTTACGCGTCTGACTCCTGTGCAGAGATTGTTACCGgttggctttattttttttaaatctcattttctgtatttgctttattttgtgtcaaaatGCGTTTAATTGTCTGTCATTTGAATGATGTGTAGCAGCGAGCATCCATTGCTTAATGCCATTATATAAAAAGGTTTCAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251487.1 lncRNA downstream 176686 12920609 ~ 12921754 (-) True LOC122349737
XR_006251486.1 lncRNA downstream 177846 12919874 ~ 12920594 (-) True LOC122349736
XR_006251288.1 lncRNA downstream 209210 12888598 ~ 12889230 (-) True LOC122348248
XR_006251275.1 lncRNA downstream 220177 12877687 ~ 12878263 (-) True LOC122348179
TU77804 lncRNA downstream 231250 12859036 ~ 12867190 (-) True G52502
TU78007 lncRNA upstream 48101 13155179 ~ 13157558 (-) True G52631
TU78034 lncRNA upstream 123337 13230415 ~ 13231214 (-) True G52651
TU78036 lncRNA upstream 123337 13230415 ~ 13230959 (-) False G52651
TU78038 lncRNA upstream 128629 13235707 ~ 13236227 (-) True G52653
TU77995 lncRNA upstream 138193 13245271 ~ 13248857 (-) False zgc:194312
XM_043243411.1 mRNA downstream 3479 13089829 ~ 13094961 (-) True snx15
XM_043243412.1 mRNA downstream 3479 13089830 ~ 13094961 (-) False snx15
XM_043245041.1 mRNA downstream 14439 13079461 ~ 13084001 (-) True prox3
XM_043245042.1 mRNA downstream 19467 13074002 ~ 13078973 (-) True tmem179ba
XM_043243159.1 mRNA downstream 107219 12968337 ~ 12991221 (-) True LOC122347902
XM_043244271.1 mRNA upstream 24029 13131107 ~ 13146727 (-) True acap1
XM_043243290.1 mRNA upstream 98417 13205495 ~ 13209101 (-) True LOC122348040
XM_043245290.1 mRNA upstream 102218 13209296 ~ 13210620 (-) True si:ch73-335l21.4
XM_043245939.1 mRNA upstream 138967 13246045 ~ 13251205 (-) True zgc:194312
XM_043245127.1 mRNA upstream 174816 13281894 ~ 13299383 (-) True ntn5
TU77936 other downstream 116644 12976947 ~ 12981796 (-) False LOC122347902
TU77932 other downstream 133514 12964324 ~ 12964926 (-) False LOC122348718
TU77828 other downstream 134373 12962377 ~ 12964067 (-) False LOC122347901
TU77750 other downstream 326003 12770332 ~ 12772437 (-) True G52473
unassigned_transcript_1284 other downstream 415209 12683158 ~ 12683231 (-) True trnar-ucu_9
unassigned_transcript_1285 other upstream 193859 13300937 ~ 13301030 (-) True trnai-uau
unassigned_transcript_1286 other upstream 194763 13301841 ~ 13301934 (-) True trnai-uau_1
TU78220 other upstream 241439 13348517 ~ 13351621 (-) True G52772
TU78218 other upstream 242542 13349620 ~ 13350426 (-) False G52772
XR_006251435.1 other upstream 303505 13410583 ~ 13437648 (-) False chd3

Expression Profile