RNA id: XM_043243412.1


Basic Information

Item Value
RNA id XM_043243412.1
length 1629
RNA type mRNA
GC content 0.45
exon number 9
gene id snx15
representative False

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 13089829 ~ 13094961 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTCCAAACTGTCAACAGTCCAGCATAGTACCAGTCACGGCGCTTGATTCTGTCCCCTTAATTATAACATTGTTGTAAATTTAAACGTATTTATGTGACAGTGATGTCTCGAAAGGCCAAAACAGAGGAATATTACCGCTTCTTCACTGTGACAGATCCACGCACACACGAAAAAGGACACACGGAATATAAAGTATCAGCAAGGTTTGTATCAAAGACACAGCCAGAGAATGTTAAAGAGGTTGTGGTGTGGAAGAGGTACTCGGAGCTGAAGAAACTACATGGAGAGCTGGCGTACACTCACAGGAACCTGTTCAGACGACAAGAAGAGTTTCCGTCTTTTCCGAGAGCACAGGTTTTTGGGCGTTTTGATGAGGCTGTGATTGAAGAGAGGAGGAAAGCAGCTGAGGCCATGCTGCTCTTCACTACTAATATTCCTGCTCTGTACAACAGCCCTCAACTCAAAGAATTCTTCAGGGGAGCAGAAGTGAGAAGACCAATGGAGACAGCTGCCGTTTCTACTTCTCTTCCGCCTCCTCTTATTCCTCTACCTGAGAGAAACGCTGAGCTGCTGGCGGAAGAGGAGACGGGGAGAGAGGCTCCTATCCAGGCTCAGGAGCTGGACTCCAACCAAAGACTGACAGATCTAACCCAACCTGAGTTGGCAGTTGAGGCTCTCAGTGACGCAGAAAGCAGCCCCACACAAGAAACGCACACCGAAACAGAAATACAAGGACTgacagaagaagagagagagactgacatCACAACACATCAGAATAACTGCACAGACCAatgctctgctgctgctgcaaccGACACTACAACACATGCCTTGCTTGAAATTCCGGGTTCTCCAGTCGACCAATCAGAGGAGCTTGATTCATTGTTCGACTTGGGATTGGACGAACATTCATACAAGGCCCCACCTCCTCTTTCAGATACAGACCTCGCTATTTTTGACCCATGTGCCAAAGAAGATCAACCGTACGGATCACCCAGCCACGCTGAACTCCTGTCTGTTCCTCTAACCGTTCCTGAGGGGACTGACTCTGCTGGAGATGTGAGCTACGTATACCAGGCCAATGAAGAGCTGAATGAGGCCCAAGAAAAAGAGCGAAATGGCGAATACAGTTCAGCAGTACAACGATATAGGACGGCTgttgatatatttatgaaagGAGTGCAAGGAGATGTAGATTTGAAGAGGAGAGAAGCAGTGAAGAGGAAGATTGCTGAAATCCTAGAGCATGCAGAGAGACTTCTCTCCATACAGACTCCCACTCAGGACCACAATACATAGAGCAAcagtttaaaacacacacacacacacacacacacacacacacacacttgactCCCACACTTACCTTCCCGCTTACTCAAATAGTTACACTTGTAGAATATGTCCGAAAGCATTATACTCCCTGCACTGTAAGACCACCACAACAGAGTTTTACTTGATTTGacactattttaaatgaataatctgATACATTTTCTGAGCCTAAGTAACTGGAAatgtcttcttcttttttttttttaatccaacgGTTGATCTGTTGTGTACATGAAGCTGTTATGTAAATGACTGTTgcctttttaatgaaatccgtctgttttgtaaa

Function

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251487.1 lncRNA downstream 168076 12920609 ~ 12921754 (-) True LOC122349737
XR_006251486.1 lncRNA downstream 169236 12919874 ~ 12920594 (-) True LOC122349736
XR_006251288.1 lncRNA downstream 200600 12888598 ~ 12889230 (-) True LOC122348248
XR_006251275.1 lncRNA downstream 211567 12877687 ~ 12878263 (-) True LOC122348179
TU77804 lncRNA downstream 222640 12859036 ~ 12867190 (-) True G52502
TU78007 lncRNA upstream 60218 13155179 ~ 13157558 (-) True G52631
TU78034 lncRNA upstream 135454 13230415 ~ 13231214 (-) True G52651
TU78036 lncRNA upstream 135454 13230415 ~ 13230959 (-) False G52651
TU78038 lncRNA upstream 140746 13235707 ~ 13236227 (-) True G52653
TU77995 lncRNA upstream 150310 13245271 ~ 13248857 (-) False zgc:194312
XM_043245041.1 mRNA downstream 5829 13079461 ~ 13084001 (-) True prox3
XM_043245042.1 mRNA downstream 10857 13074002 ~ 13078973 (-) True tmem179ba
XM_043243159.1 mRNA downstream 98609 12968337 ~ 12991221 (-) True LOC122347902
XM_043244518.1 mRNA downstream 124866 12964124 ~ 12964964 (-) True LOC122348718
XM_043243158.1 mRNA downstream 126400 12962377 ~ 12963430 (-) True LOC122347901
XM_043245264.1 mRNA upstream 3479 13098440 ~ 13107079 (-) False trip6
XM_043245261.1 mRNA upstream 3479 13098440 ~ 13107078 (-) False trip6
XM_043245263.1 mRNA upstream 3479 13098440 ~ 13107002 (-) False trip6
XM_043245262.1 mRNA upstream 3479 13098440 ~ 13106941 (-) True trip6
XM_043244271.1 mRNA upstream 36146 13131107 ~ 13146727 (-) True acap1
TU77936 other downstream 108034 12976947 ~ 12981796 (-) False LOC122347902
TU77932 other downstream 124904 12964324 ~ 12964926 (-) False LOC122348718
TU77828 other downstream 125763 12962377 ~ 12964067 (-) False LOC122347901
TU77750 other downstream 317393 12770332 ~ 12772437 (-) True G52473
unassigned_transcript_1284 other downstream 406599 12683158 ~ 12683231 (-) True trnar-ucu_9
unassigned_transcript_1285 other upstream 205976 13300937 ~ 13301030 (-) True trnai-uau
unassigned_transcript_1286 other upstream 206880 13301841 ~ 13301934 (-) True trnai-uau_1
TU78220 other upstream 253556 13348517 ~ 13351621 (-) True G52772
TU78218 other upstream 254659 13349620 ~ 13350426 (-) False G52772
XR_006251435.1 other upstream 315622 13410583 ~ 13437648 (-) False chd3

Expression Profile