RNA id: XM_043246125.1


Basic Information

Item Value
RNA id XM_043246125.1
length 1445
RNA type mRNA
GC content 0.55
exon number 11
gene id mrps27
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 652589 ~ 658219 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATTCTTCGTGAACCTCCCCCCCTCCTCCCGCGCCGGATGGTTCAGTCTCAAGATGGCCGCCTCCATCCTGCGGCGCTGTCTGTCTCCCGTTCAAACCTTCAACAAACGCGTTAATTACAGAGCCGTCGCCAGGAGATGTCTGCTGTCTTCGGCGTACACAGACCCTGCTGTTTGGGAGCAGAGACCCAAAGATGCACAGGACCTAAGTCAGCTGGCGTCTCTGATGGACAGAACGTATGAGAGGAAGTTTCCCGTCAGCTCTTTGGTCATTTCCAGGGTCAGAGAGGATTTTACATGGCGTTTTAAACATATAGTGCACTGCATTCACACGGAGGACTCTGctgctcgtTTCATAGATAATTTATCATCAAAAGAGGAGGTGGATCAAGCCCAATATTACCTGTATAAGTTTCGTCACAGTCCAAACTGCTGGTATCTTCGGGACTGGACCGTTCACAGCTGGATCCGACATTGTCTTAAATACAGCGCCAGAGATAAAGCCCTCTACACGCTGAAGAACAAGGTTCAGTTCGGCATGTTTCCCGATGACTTCACCTTCAATCTTCTGATCGACTCCTTCATAAAAGACCAGGACTTTAAAGGAGCCTGTTCGGTGGTGGAGGAAGTGATGCTTCAGGAGTCGTTTGAGCGAATCTCCACGCAGATCCTGTCGCTTCACGCCCTCAGCAGGTACCTGGCGACCGAGCCCCACCTCgggTGGGAGGAGGAGAGGAACCTGGGAGCGTGTCTGATGCTGGCCGGACTCAAGCAGGAGAACTCCGTCGGCTTCAGCGCTCGTCTGCTGGGATTGGCTCTCATCGGTAAAGTGGAGCTGTCCCGAGGGATTCACGCCGTGTTTCACAAGATGCCCCTGATCTGGACCTCGGGTTATCTCGGGCGAGCCCTGGCCGTCATGAGCGCCGCGTGCGACTTCAGAGACGTCAAGATATCTGAGGAAGTCCTGGCCCGCGTGGAGAAGATCTTGCAGGATCTCTCAGAGAACGTCTCCGACTCGCCGCCGGAGGAAGACGACGCGCTGGAGGCACGCAAGCTACCGGAGTACGTCAGCCGCTTCGAGGAGCTGAAGGAGCGCCTGGTGTCTCGGGACCGGACCGACTCGAGGAGTCTGGAGTCCCTGGCGTCGTCTCTGACGGGGAAGGCGCTGGCGGCGTGTGAAGACGCAGACCTGGCCGAGTACCAGCGGACGCTGAAGGACTGGGAGTCCGAGCGGCAGCAGCTCATTCTCAGGGAAAGAGAGACGAGGGAGAAGAACCAGAAGAGCGTCTGAGCAGACCGCGTCCTGCAGACAGAGCATTGTTTGTCGTGTTTATTGTCTTTGGTTGGGTCGGTCGAGATAGAGGTTTGTGTGTTAATATTATTGGGATTCTTTTTCAACGCCCTGTAAGTCCGAGcggtataaataaacaatgaaaatactCTTTTA

Function

GO: NA

KEGG:

id description
K17406 MRPS27; small subunit ribosomal protein S27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88337 lncRNA upstream 8021 567295 ~ 644568 (+) True G59756
TU88344 lncRNA upstream 21243 629672 ~ 631346 (+) True G59761
XR_006251597.1 lncRNA upstream 44582 599711 ~ 608007 (+) True LOC122350371
TU88294 lncRNA upstream 86759 562860 ~ 565830 (+) True G59735
TU88295 lncRNA upstream 86759 562958 ~ 565830 (+) False G59735
TU88410 lncRNA downstream 97116 755335 ~ 766628 (+) True G59801
TU88462 lncRNA downstream 215669 873888 ~ 874199 (+) True G59815
TU88457 lncRNA downstream 289458 947677 ~ 950973 (+) True G59811
TU88474 lncRNA downstream 299004 957223 ~ 958231 (+) True G59825
TU88472 lncRNA downstream 300460 958679 ~ 960171 (+) True G59824
XM_043247688.1 mRNA upstream 4286 635423 ~ 648303 (+) False znf366
XM_043247685.1 mRNA upstream 4286 635429 ~ 648303 (+) False znf366
XM_043247687.1 mRNA upstream 4286 635700 ~ 648303 (+) True znf366
XM_043247689.1 mRNA upstream 4803 635427 ~ 647786 (+) False znf366
XM_043246777.1 mRNA upstream 24072 613544 ~ 628517 (+) True smyd1b
XM_043246368.1 mRNA downstream 6412 664631 ~ 669531 (+) True ptger4a
XM_043246209.1 mRNA downstream 14651 672870 ~ 711338 (+) True loxhd1b
XM_043246155.1 mRNA downstream 89192 747411 ~ 759368 (+) False mfsd14bb
XM_043246154.1 mRNA downstream 89192 747411 ~ 759367 (+) True mfsd14bb
XM_043247784.1 mRNA downstream 123605 781824 ~ 784101 (+) True LOC122350985
TU88285 other upstream 112523 537794 ~ 540066 (+) False cdc14b
TU88420 other downstream 145434 803653 ~ 804839 (+) True G59807
XR_006251599.1 other downstream 183858 842077 ~ 852004 (+) True znf608
TU89150 other downstream 1257241 1915460 ~ 1918371 (+) True G60259
TU89212 other downstream 1356661 2014880 ~ 2017520 (+) False polb
TU89216 other downstream 1372659 2030878 ~ 2033063 (+) False LOC122350053

Expression Profile