RNA id: TU189031


Basic Information

Item Value
RNA id TU189031
length 1556
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G139635
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6765964 ~ 6767519 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaaaaaaaaaaacacaataaaagtgGTTTTACTTTTCCAGTGTTAAACAAAGGTTACAAGACCATGTACAGTAAATCAAGAGGAACAGAAGAACAGAGGCTGCAACGGAATATATGTGTATGTTGTAGtatatttctgcaaatatgACCAAATTATAGAATAAGTAAATACAACTCTGTCCAtagaaaaaagaatgaaataaatgaCGATAAAACCAGCCTGTGTGGAAAAGAGATTATGGTAAAAAAttaagatgattttttttacactgtgaaTCAGTTTTCCTGTAAGGGATTAGGGTAAACTAGAttttgttttaccatattttttctcattataaggtgcatttaaaatcctttaattttccctgGAGCACCTTATGTATCAGTTTAATTAGTagtagccgctaaccgcactagctctttcgccgttcagaggtattatcttcctgtagcctgctgctatcctcggctagcactgctggagaagcattagccgctaagcgctagctgtttcggcattcagaggcgagtattaacgcactgtagtctgcatatttaccgtgttaaaacaagctatgtgggatgaaccacaagttaacatcgccctggcttactggatcactcagggttcctcagtatagcgctgttgggtggcatttactagcggttagctgctaatgctagcgCTGCTGAAcctagaaatctaagcttgctgtaaataaacagaagcacttcactcagccaaataaacagttttcaggagagaaatctgtgtagattaacattcagtgctcgtttgacttttttttttttttaaacaattacagttttgtttacttagcttagctttacaggtctcaccacccagcagtgaattagaaggaaaacatggtgacacccctgttccttactagtgtcgcataatgcgcctaataatctggtgcgccttatagtgcggaaaatacagtaaatgaaaATTACACAGTACTGCTAATTTAGCAGGACTCTCtcaagcagataaacatgaagcTGTGAGACAATGAAACTtagttctctggaatgattgaGCTCCATCTCCAGTACTTGAGGGAATTGGGAATGATTAATTGAGGTGGTAAACACTCAAGATCCTGACCTCATGTCACTgcaatgaatgcaatcaaatccttgcAGCAATTATCTAAAATCGAATACAGTAGTATCTAAAATAGGATTAATATAGTAAAATCTGAGCAGTAGATAATGTAGctccaacaaaataaaatgattttaggAGAAAAGATAATTCAGCTGCTGACACACTTCTGTTGGCTTACCTGTACATGTATTTGCAGCACTGCTTGCACAAATAATCTTCATGGCAGAGTACAAGAAGAAGCAGAATCAGTAAATTCGATATTTGCTAAATGCTACAGAACATCTAGATAAGTCTAATAGATTTGGGGGGAAAAAGTGTTGTTgactgattaattaaaaaaaagaagatacacATTTCACAAAAAGTTCCAAAACTTCCACCTACctaactgtgaagcatgggggcgGATGTATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189029 lncRNA downstream 6498 6759192 ~ 6759466 (-) True G139633
TU189028 lncRNA downstream 8134 6757476 ~ 6757830 (-) True G139632
TU189027 lncRNA downstream 11527 6753982 ~ 6754437 (-) True G139631
TU189008 lncRNA downstream 27022 6736093 ~ 6738942 (-) True G139618
TU189019 lncRNA downstream 34306 6729705 ~ 6731658 (-) True G139624
TU189054 lncRNA upstream 74461 6841980 ~ 6911922 (-) False LOC103041520
TU189072 lncRNA upstream 86467 6853986 ~ 6856889 (-) True G139658
TU189053 lncRNA upstream 108576 6876095 ~ 6911922 (-) False LOC103041520
TU189059 lncRNA upstream 178239 6945758 ~ 6948035 (-) True G139649
TU189056 lncRNA upstream 191023 6958542 ~ 6969153 (-) True G139647
XM_022677901.1 mRNA downstream 48877 6704369 ~ 6717087 (-) False LOC103038610
XM_022677898.1 mRNA downstream 48878 6704369 ~ 6717086 (-) True LOC103038610
XM_022677899.1 mRNA downstream 49140 6704369 ~ 6716824 (-) False LOC103038610
XM_022677891.1 mRNA downstream 76241 6564957 ~ 6689723 (-) True lamc1
XM_022677894.1 mRNA downstream 216497 6511097 ~ 6549467 (-) True lamc2
XM_022677890.1 mRNA upstream 1802 6769321 ~ 6813886 (-) True LOC103024388
XM_007258036.2 mRNA upstream 52309 6819828 ~ 6826665 (-) True LOC103040079
XM_007258037.3 mRNA upstream 61233 6828752 ~ 6840206 (-) True LOC103040380
XM_022677924.1 mRNA upstream 143490 6911009 ~ 6944134 (-) True LOC103041520
XM_022677930.1 mRNA upstream 251545 7019064 ~ 7028638 (-) False rnf212b
TU188973 other downstream 335645 6417385 ~ 6430319 (-) True G139587
TU188974 other downstream 336619 6417385 ~ 6429345 (-) False G139587
TU188831 other downstream 391255 6304969 ~ 6374709 (-) True G139487
XR_002651013.1 other downstream 641839 6120119 ~ 6124125 (-) True LOC103026010
XR_002651012.1 other downstream 711625 6022609 ~ 6054339 (-) False LOC111194281
TU189125 other upstream 401446 7168965 ~ 7182783 (-) True G139706
TU189726 other upstream 2941770 9709289 ~ 9714037 (-) False LOC103044908
TU189989 other upstream 3300981 10068500 ~ 10099769 (-) True G140342
TU189985 other upstream 3330649 10098168 ~ 10099769 (-) False G140342
TU190197 other upstream 3743570 10511089 ~ 10514807 (-) True G140472

Expression Profile