RNA id: TU123072


Basic Information

Item Value
RNA id TU123072
length 1187
lncRNA type intronic
GC content 0.41
exon number 2
gene id G91512
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 17296821 ~ 17298245 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTCTGTCACACAGAGATGGATTggtcaattttatttgcattctcCTGCATGGCCTTCAGGATACTGAGCTGCAGTTTACATTCTTAAACAGATTGTCCTACAAACAACCATGGACTTATCAGTTTCATCATGGAACAGAAAATCTTTTTAGTATCGTATTATAGATGATTAGTGTGATTGCGGTAagcaaattttattttttatctgttttttggATCTGCTTCTCAATCCAACAATTTTCAGACTATTGACACCGTTTCAGGAAAGTATAGcaatacctcagcaaccacctagtaacataTTAGCAACCAACTACTTAGCATAGTAAATGCCTCACAACACTTTTTCAACAAACACCTGTGCTTTTCCACCTGTGCTAGAAACATCTTAGCGATAACCTGGTAATACCTAAGCAACTGGCTCCTgtatcataaaaacacattagaaaCCGCCTACCAAAATACTAGCAAgcaacacattaacaatcaCCCAACAACACCTTTACACCCAACACCTTAGCCACCACCTAGCAATCAACTCCCATATAATAGTAACATAGTACCAACTACCCAGCcacaccttagaaaccaacaACTATGACATAGTAACACCTTAACAACTACCTAGCACACCTCTGCGACACCTTCACAATCAACATCTTAGCCACCACCTTTCAACACGTACAAATGAAACCtacaacatagcaacacctcagtagccaccttgcaacaccttagcaatcaacaGACATACCAGACTGCATACCATATTACACCTCAGCAACCGCTTAACACCACTTTAGCAATCAACACCTATACcagagcaacaccttagccTAACAACCACCTCCTATATAAGAGTTACCCCATACTAAATACCCAGCAACACCTCAGAAACAGCTATGACATAGTTActccttaacaaccacctagcacacctCTGCTGAGCTGCAGTCACACTCGTAGCTTCTGCAGGAGCAGCACTGTGTAGTTATTCCGACATTGCTTCACTGTATTCTGAAACAGTGAGCATAAGGAACATGTAATGATAGTTGTATGAAATCAGTGTATAATCTTGGTTTTTGAGCAATGTCCTTTTCAGCGTGAGCCTGATGAAGgctttctttgtctgtatgtttACTGTGGGATGTGGAGGCTTACcttgagcaaacacattgtgcGGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123073 lncRNA upstream 17073 17275671 ~ 17279748 (+) True G91513
TU123066 lncRNA upstream 28404 17268116 ~ 17268417 (+) True G91509
TU123033 lncRNA upstream 93414 17201163 ~ 17203407 (+) True G91484
TU123038 lncRNA upstream 99833 17191603 ~ 17196988 (+) True G91487
TU123037 lncRNA upstream 105238 17191281 ~ 17191583 (+) True G91486
TU123080 lncRNA downstream 60594 17358839 ~ 17447933 (+) False rcc1
TU123102 lncRNA downstream 171786 17470031 ~ 17470245 (+) True G91534
TU123106 lncRNA downstream 187220 17485465 ~ 17486028 (+) True G91537
TU123121 lncRNA downstream 210505 17508750 ~ 17508978 (+) True G91547
TU123202 lncRNA downstream 276299 17574544 ~ 17575784 (+) True G91597
XM_007251757.3 mRNA upstream 44124 17240552 ~ 17252697 (+) True LOC103041278
XM_022673669.1 mRNA upstream 355414 16829220 ~ 16941407 (+) False LOC103040229
XM_015606464.2 mRNA downstream 23832 17322077 ~ 17349965 (+) False hivep3
XM_022673677.1 mRNA downstream 23832 17322077 ~ 17349965 (+) False hivep3
XM_022673675.1 mRNA downstream 31995 17330240 ~ 17349965 (+) True hivep3
XM_022673678.1 mRNA downstream 31995 17330240 ~ 17349965 (+) False hivep3
XM_022673679.1 mRNA downstream 39346 17337591 ~ 17350944 (+) False hivep3
XR_002650442.1 other upstream 877441 16395214 ~ 16419380 (+) False trim71
TU122481 other upstream 2013766 15281509 ~ 15283055 (+) False LOC103025288
TU122479 other upstream 2017657 15276253 ~ 15279164 (+) False LOC103025288
TU122457 other upstream 2080313 15160215 ~ 15216508 (+) True alg14
TU122125 other upstream 3022123 14272064 ~ 14274698 (+) False eif1b
TU123306 other downstream 613656 17911901 ~ 17912443 (+) True G91678
LOC111193302 other downstream 1049779 18348024 ~ 18350624 (+) True LOC111193302
TU123361 other downstream 1049782 18348027 ~ 18361095 (+) True G91728
LOC111193341 other downstream 1053718 18351963 ~ 18352643 (+) True LOC111193341
LOC103024770 other downstream 1055918 18354163 ~ 18354889 (+) True LOC103024770

Expression Profile