RNA id: XM_022673675.1


Basic Information

Item Value
RNA id XM_022673675.1
length 9864
RNA type mRNA
GC content 0.45
exon number 7
gene id hivep3
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 17272114 ~ 17350944 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttttttttttccccagatatAATGGGATTCATGTTGGCCAGAAGTATCTCGTTAATTTATGAGTTGTATCTGTCTAAAACGCAATGCTAAGATGATTCTTCTGTGTTCTGGAATATATTTGAGACAAGCATTTATATTCAgcctgtaaaaatatttaatcactatatttaagaacattttaatgATACCGTATTTATCTCAAAACAGATAATTTTAGTCAAAATGTGTCAGTAGTGAAAAATCctaaaaactacaataaaaacactgccCACTATTCAGAGTTTAGTGATGTTTATTCAATTAAACTGCGTTAGCTACACTCTTTGTAATGGAATgtgactctgaaatgtggttctTTGCCACGTTCTGGAGAATATGTATTAAAGAATTCTCCAAGATAATGTCAAGTCACCTGCCTGTGCAAAAAAGTCGACTCTTAGCACTCCAACAAAGTTTACTTAATGAAAAAGTTAAAACAATAAGACACTTAAACTTTTGGAATGGTCAATCAAAGTCATGGCCTACAAcctttcaaaatgctgtgtctGAAAATGTGTCTGAAGCACTTTAATGCTTAAAGGCCTACAAATGTCACTGCACTGAAGCGGATCTGCAAGTAGGAGTGGGCCAGAATTCCTCAGAGGAATTGTAAGATATTAATAAACAACTACTGAGAGTGTTTGGTGGCAATTAGTGCTGCTAAGGGAGGTGTAACTAGGCTTTGGAAggaatcactttttcacacaggaggATCAGTTGTTCAAAAGAACAAAATGTCCAACATTGTGATTTTCTTCTTCAGGGTCGCTTTCTTGAATTATTGGGTATACATTTTGGAACAACTCGGCCAGTTTGCTTTTGCTTGCATGTTAGTTACTGAATAGGGGTGGAACAAAATTTTGATATCTTAATATTTAGGATATGCAGGATCATTTTTGTCTGAAATACATTATCGATATGTGGTGTCagatatcaatatattttttttaaacacaatgaTTTGACTTACTAGAGACAAATTctgtaaatacagaacaatacaaaaacagtacaccaataaataaagtatttgctTTTTTAGGAGTATcatatcctcttcagtaacacacaGATAGCATGAAGTATTAAGGATTCACAGTATTGTAATATCACCAGCAATGCATCAAGGGcaatatatcgtgataatattgtattgtgaagCCTATCACTATCACCAGGAATCACAGATGTATTGTCTGTATTTTAACAGAAAGGAGGATTATAAATTGATTAGATAAACAGAAGGACTATAGTCAGTAATTACAGAGCTTGAGTGCTGCTACAAAAAGCTGACAAATGAGCAACGAGTGTAAAAACAAGGGGGTGTTCACACAATTCTGGCTGGACTGTGTGTAAACTATAGGGAAGCCTGCTCAGTGGAAGTGCCCGAATGCTGGGTTTCCCTGCCCTGTGCAGTCAGTCTAGTGCTTTGAATAATTCACAGGCTGTTTTGCCCCTTCCTAAACTCCCGTAATCACCCTGTTTAAAGGTTTCATCAATACCGTGTCCGAGATCATTAAGTCCTACACTGATCATGGGTGCATTTACAGACATCCATTACAGCAGCAAGAGTaatatctatctctctctcactctcactcactcaaacactcacacagcCATTTTCTCCTGTCTCTGCAGCCACATATAATTACCAATTTTCTGGCCTTTTGTGAACACAACCCATCCTGTCATATAATACTTGCAGCTTGCTAAACTGAAAATGTTCCCTGCAGGTGTGGGAGACTACTTACTCATATCTCTGCATGCAGTTCTTCTATATGAAGTTGCCTCAGGGAAAAAGATATAAAAGTACACCACCAAGGGGAGAGACACTGTTAAGGACTGATCATTATAGAGCAGATAGTGAACAGTGCTTGCTAAATACAGTATGTGAAATATTGTTTGACAAGGAggaatttaaagcatttcttaAATGTATATTCTTAAACATACTCTGACTTGCCACTAGGAGCTagtcctatgacttttgccatgtcctacgGAAGCTAAGCAAGGCTGCATGTGGTTTCTGCTAGAGTTGCTTGTCTGCTCGCAAGGACAATTCTAGGCAGATGCCACATGCCACAATCATTACCAACCACTGATCTggccactgtgggtggtaatgccttctacgCCATTTTCCCGGTACACCAGTAGACTGTGGCTCAAAGAATGTTGAATgcctgcacaacttcagaaatgcaatgtccCCTCCTTtcggcacccactatcagacctcgctCACATGGCGTTATAattcatgttgccttgccaCGTGCACACTTATAACTAGGACTGCCCTAATGATTCTATTGGTAGTCAATTAATctggtgattatttttttcgattagtttcaataatcaacattgtcgattatatcgactaatcgctgCAGCCCTACTAACAGCTTGTACAGATATGGCCAGCACTCTCAAGCCATCCCGAGATAACACCTTATGATCAATTTGCACACTGCTCTCCCGtgatttctggcatgtcagtgtatagtgtatactgATACATACTGAGGTGTAGATGATTTCTTCAGCACATTAGGACTAGCAATCTGCTTTAAAACTGCTTTAGTGACTTAGTTTTCTTGTAGtttccaaataaataatttggtaTCTATTGGCAAATAACTAAATACCAACCCTTTTCCCATTTGGGAGAAATCTATTTTTCCTTAcaattattacatattttattgttcatgaATAGAGAAATGTAAGTCTTAATGAAGcatattttagttttctaatatagaaacaaataaattttttttaaggattttcttttttcttctaacCAAACCATTTGTAGAAGAGGTTTGTgtgtaaagaacctttaaattgGAAACGAATCTTAAAAATGATCTTTTACCGGTATTGGTTCTTCTATTTCATTGATTACAGAACCATTAGCAGCACCttgtatttttaagagtgtacttATACTCTGAAGAAGCTCATTAAATTGTTGTGCATCACTTAACATATGCCAAATGAGAGCATACTCACTCAATTCAaagttatttactttttttattttttttgcctccgcagttcttctttctctatctatGAAGGAAGTTTGCAGTGTTGTTTGCAGACATATGGGAAATGAAAGCGATGCCTCATTAAAAAGTCTCgtcactgtggagctcttgCACCAGCCTCGGATGCAGCTAGCTGTGTCAGACCTGTTTACTTAAGTTATTTGAATATTGAATAATTTTCCGGATTCACAAAGAAAATGAGTCTTATCAGCCTTATTCTAGTACAGCTCaacacaaacctaaatggatcTGACTGAAAAGAGGGTGCTGGAATATGATGAACATCCTAACAGCCACGTTGGGCTGGACAATAaacaaatatcaatatatatgaCAATGgatcATCAAAGTGCTGGCTTGTAAAACCCTGAgggaacagaaaaagaaaggttTGAAAACTCATATCTGTGCAGAAAGTAACTCAAAAACATTTTGTGCTTTCCTGTGCCAAGCTTCATTGCCAGAACTTGATCCAAAGGAGTGACACAATGCTGAACTCTGCCAAGAGTAATTCTGGATGGGAGAAAAGGAGGATAGATTTTGGCATGAATCAGAAATAATCCTTTAGagttttttgtacatatttcaCAAGAGTCCCCAGCCATTTTTATTCAAGATGTTTCTGTGCCCAGGTACATCCATGGGGCCTTGTGGCTAAGGCAATGATGTTAAGGGGACTAGTGCTCATAGAAGCATTCCCAGTGCACTCATAAGGCCTCCTCCCCACATTCTATGGAGGCAGAGCATAGCCGGCCGGCCGATGGGGAGCggtctgatggacaacagcagcCTCTGTCTGAACCTTTACGTAGGGCTGGGTTGCCTCAGCCACAAGAACAGGCTACCTCACAGCCGATCCATGGATCCCATGGCCGCCAACAATACAGACAGCCAAAACGTAGTGATATGCTCCaaagacagcagcaacagcagtctCAGGTACGGGAATCCTCCTGGCAACTTCCAGATGTCCCAGGTCCCTCTAGAGGCAGCTACTCATCATCCTCTCTTGACCCCACTACCCAGGTGTCTCGTGTTCACAGGACTCCATCTCAGACCAGTCAGGAAGTACAGGAAGGTGGTACCGCATCTAGACGGGAACGTAAGCCCCAAAAACCAGGGAAGTATGTGTGCCCATACTGTGGCCGGCCATGTGCAAAGCCAAGTGTCCTCCAAAAACACATCCGCTCACATACAGGAGAGAGACCATATCCATGTGTCCCCTGTGGCTTCTCattcaaaactaaaagtaacCTGTACAAACATCGTAAATCACACGCCCATCGAATAAAAGCAGGCCTGGCATCTAGCCGCGaagagcacagttttagtgGAGTTGAGAGTGGAACAGTTGGAGATGAGCAAGAGGAAGCAACAGAAGCCGAAAGCACAGATTCTGAGGATGAGACTGGTCAGCGTCGGCCATCTACCTCTCAAGACAGGCCAGCTCTGAGGAAAAGCTCCAAGGTTGAACTGTCATTCTCTGAAGAAGGACCAAGAACAGAAGACTCACAAGCAGTTAAACAGAGGTTAGCCATGCGGctcagtgagagaaaaagaggccCCATGGCCTCACCAGATGAGACACCATCATCCTCACTGGGTCCTGGCAGTAAAGGCAGCACTGAATCTGGCTACTTCTCAAGCTATGGGAGTGCTGAGCTCTCTCAAGTGAGTCCTCCTAATGCCAATGCTAAATCTTATGCTGAAATTATTTTGGGAAAGTATGGAAGATTGGGTCAACAACAGAGAATTTCAAACCAACAAATACAGTTATCATCAACCTCTTCATCTTTGGGTCAAGAGGAAAAATCCATTCCTTTCAATGTGCCTAAGACACAAGTAATTGAACACATTACAAAATTGATCACTATAAATGAAGCAGTAGTTGACACAAGTGAAATTGACAGTGTCAAACCAAGGCGTTCTTCTCTTTCCAGAAGAAGTAGCATTGAGTCCCCCAAGTTTTCTTCACCCAAAGATCCTTGCGTTTTTGATCCAAAGGGAGACGTGCCAGGCCCTAGTGGCAGTACTGGACAAATTGTTCTCAGTAATCTTGCAGCTGAAAGGCAGCATCCTCAGTTAGTGGAAGACACACATGTCAGTGAGTGTTCCAGCGCTGTTTTTTTGAGAAGTCATTCAGTGCCGTCCTGTGGTGGCCAAGATGCCCCACCTAGCACATCTTCACACAGCTTTCGCCTCAGCCACTCTTTTGACGAGCAGCAGGCTGCAGCAGCTGAAATGAGAGTCGGCCATCCTCATCGAATGTTACGACGCCAACCAGCCATTGAGATGCCAATGGGAGCTGACCTTGTAGCAGAAGCTGGTCCTTCTACTTCATCTCTGACTGAAACAGGATGGAAGTGTGATATTTGTGGAACTTTCTTAAAGAAACAGGATAGTTATGCAGCTCACAGAGTTTTCTGTATGATTAAGCCTTCACACGAGCAGCAAAGTGAGAAGGAAGGTAGTCCTGTACGAGAAAATCGGCCACAAATGATGCACTATAAGTTCAAGGCAATGGCAATGGCAGTGCGAAAacgaagaaaagaagaaagtcTTGAAGAGGATCCTCCCAGTCCAGGGCCAGCTGCTGTGTCCTTTAACATCCAGCCGGCAGCATCAATGATGGCAACTAAAAGTGATTTTGAAGGCTTCTCAGGGCCTATTTCAAAAACTGAGCCAGAGAAAATGGGGCCATATAAAGAAATCTCTGTAATCCAGCATACCAGCTCATTTGAAAAGCAGGAAAGCATGTCCATGGAGAGTCAGGAATCAGAACTTGAACATGAACAATCGCAGGAGCCAAAACAAACTTCTACATCCAGGTTAGTTCGACAGCCCAACATTCAAGTGCCAGAGATCCTGGTGACAGAGGAACCAGATACTGAAATGGTCTCACCTCCAGCAAGTACATGCATCCCCAAAGAATTAGAGAAGGAAGAGTTCCAGTGGCCTCAGCGTAGTCAAACTCTGGCACAGCTTCCTGCCGAGAAACTGCCACCAAAGAAAAAACGACTGCGTTTGGCAGAGGCTACCCAGTCATCGGGCGAATCTAGCTTTGAATCGACCTCTCTACCACGCAGCCCAAGCCAAGAGAGTAATGTTTCCCACACCTCTAGCCGATCTGCTTCTTTTGATGAACCAGGGAAGCCTGAATCTGAGATGCAGACTGGTATGTGGAGTTCTCAAGGGTCCCACATGCTGACTGTACCGGGTTCTTATCAACATCATCAATCTCAAAGGGAAATGCGTCGCTCTGCTTCAGAACAGGCTCCTGCAAGTCCTCCATATCCTGAGCAAATAGTGGAGACTCGAAGTAAGTCATTTGACTATGGATCCTTGTCACCAAAACCTACTTCTACATCTTGGAAGGAGAGGCGAAAATGTCTCTTGGTGAAGCATGCAACTCTTGGGAAGCCTGAGCAGGAGGAAACTTCTTCTGGTTTGCAAAATATTCCAGTCGTGTGCCAGTCCTATCCTGGCTATCCTGCCCTCTCAGTTGGTGACCACAGAACGAGCAACATTTCTAGTCTTAACCCAGAGACTCTGGGCAAAACTTTGCAGCTTTTCCAACCCCCTCTTCCTTTTTCAACGACAGTTTACCCCCTGACAGGCTCGGATACTTTTACTCCTCGGCATCTGACAAGATTCCTGCCAGTCACAACAACCATATCTGAAGTTATTTCCAGTCATATGTTTCAACAGGCTCTTATACATGCTGGACCATCTCAACTTCATCCAAGACAGATCCATTTAGCAGAGCGCTTTGTCCTTCCGCTTCAGCCCTACCCTACGTTGCTTCCCTTGCAGTACCCAACTAGCAGTGGCCTAGCCATCCAGGTCCCTTCAGGTCCACCTGTCAGGGAGTCTAGGTCATCTCCTTCCACTGTACATGGTCCCTCATATCACCAGCTTGTCGCACACCAAAAACCTCGCCCCATCATTGCGACATGCCTTGAGCAGCTCACACCAGTGGTGTCACTTGTGGTGCCTGTGCGTTTACAGACTCATATTCCTACATATGCTAGTGCCATGTACACAACCATCTCCCAGATTTTAGAAACAACACGGCCTCAGCAGCCAATCTGCTGCACAGCAATGGTCATTATGGGAAAGCTGGAGAGCAGCAAACTTCAACGATCCTACCTTAGGCTCCCCAGTCCTGATCTGAAGACTTCTATACCCATGTCCCTGCCTCTGGAATTTGGATCAGAAAGCGCATCCGATGAAAGCTCTGGACCACTTGTTGCTGGGGGAAGTAAACGGATGCTTTCTCCAGCAGGTAGTCTTGAACTCACCTTAGAGGCACAGCGTCACCAGAAACGAGTcaaagaagaagacgaagaggTAGATGaacaagaagaaaagaggaaagatgatgatgatgatgatggtgatggaaAAAGAGGTGGGAAATCTCTGGACAGGGGTCAAGGAACAGAAAAGGAAACGACAACAGCAGggctaaaatggaaaaaagaacaagagaaagaaggacagaAAACAGAAGAGTTGCAAGAATCTATGGTCAACACACTTGAGCTTGTCCAAATGGCAGCTGGACCttttaaaaaagaggaaaagaaagaagaaggcCACAAAAGTCCATCAGCAGTTGAGATTACAGAGAGATCTAGAGACCCCTTGTACCCCAGCCTTCACACCACCACGTCGGTGAGCTGGTGCTACCTGAATTACACCAAGCCCAATCCATCTGCTCACAGAAATCCACAAACATCAGTTTATTCGTCCTGGAGTGTCAGCATGTATAACCCCAATCTGCCTGGCCTGTCCACCAAAACGGTACTTTCACTGCTGTGCTCTAAGCAAACGTATAGCTCCGAGATGTATACCATGGCCACAGCTCCACCTCTGACAACGGAGAAGCTGGTCCCTGCTAGCGACGAGAAGCCCATGGTATCAGAGGTATGTGCCAAACCACCCAACACAACTGACAAAGCGAAAGAAGAGCCTGTGACTAAGAGAGCggaaaaagaggagaaaggTACAGAGGAGGCTCCCACCACCTCCAAGCAGAGTGAGCCACCCCGAATTTGCATCTTTGAGGGAGGGTTCAAGTCGAATGAGGAGTACGTCTATGTgagggggagggggcgggggaagtatgtgtgtggtgagtgCGGGATCCGCTGCAAAAAGCCCAGCATGCTGAAGAAGCACATCCGCACTCACACAGATATCCGCCCCTACGTCTGTAAGCACTGCAACTTTGCCTTCAAAACCAAAGGAAACCTCACCAAACATATGAAGTCGAAGGCACATGGGAAGAAATGCCAGGAAATGGGAGTGTCCGAATCATCCATAGATGAGCTGGAGGCTGAGGAAGCAGGGACCAGTGAGGAGCAAGTATGTGAGTCAGAAGATCAGGACGAGCACCAGTTCTCTGAGGCTGAAGActctgaagatgatgatgaagaggatgacaatgaggaggaagatgatgatgaagtcTCTTCCCGAGAAGATCCATCGTCCTGCTCTACAGACACCCGTCACTCAGACAGTGGTCAGGGCTCACAAGCTGATCCGCCCACACCTGCCGCTCCAGATAGAGAAGAACATCCTTCTCCGTGCCGTCCATGGAGCAGCGGAAGTGTCTCATCGCCAGGCAGCAAGAGGGCACTGTTTTCCCGCAAAGGCTGGGAGCTTTCTCCCAGAGCTTTCTCTCCTGCGAGTGAAGGCTCACCTCTCAGGAGTCTGTCTCCCAGGCTGGAACTGTCCTCACCGAGTCGacatctctctccctccccgGAAAGAGGTCCTTCTCCTATCCAAGCCTCTCCAGTCAGACCTCTATCTCCTCTCCGGCCACTTTCTCCTGCCCGCTACAGGAGCTCGAGAGCCCCCTTCTCACCCACGCCGCTCAGACCCCAGCACAGACCCCACAGCTCCCCTGCACAGTTCCACTGGGACTCCAGCACTCAGGCCAGAGAGAGCCAACAGGAGAGACCCGCTACTCCAGCTACTCCAGGTGCCTCACAGGCTCCACAGAGGCTGAGCTCACCGCATCCCAGCCTGTTACCCCCAGCCCTCcgtctctctcacactgatCCTGCTCCCCACCTCCCAGTCACCCCAAGAACTATGGACCGCATGTTCAGCCACCTTCCCTTACACTCCCAGGACCAAGCCCGCATGCCTTACCATATGATCCCTATCGGAGGAATCCAAATGGTTCAGCTTAGGCCCAGGACTTGTCCCAAACTGGAGCGAAGTTCATCCTCCACCCCATCACCCACATCTCCCAAAGAGGATTTCCTTTTCTCCCTGAGCAGGCAGGTCCCATCATGGAGCTCCCACCCTGAAGCAAGCCAGCAAAGCACTCTGGCAGTTAGTGAGACGCAGAGCCTGGGGAGGGAAGCCAGGCCAGCAGGGCTGGAAGTTCCTGCAAGCAGCTCCACATTAGCCAAATCATCTCCACAACACGGCCACGGGGAGTCGagggaaaaagacagaaagctACACGGCAGCTCACGTCCCTCTAAGCCCCGTGCCATTGTCCATCAGACATCTCAAGAAGTCGGCCAAGATAAGGGTAAAAGCACCAAGAAGAGCCCCGGCTTTGCTGGGAAGGAAGTTCAGGCCAGTTCACACAGAACTAAACCGCTTTCAGAGCCGGACGCTCCTAAAGAAGGCCCATCCAAAAGGCATGACTCAAAAACGGAGGAGACTGCAGGAGAAAAATCTGCTTATCCGGCTCAGAGCCCGGATAGCAAACCAGACAGCACTTAA

Function

GO: NA

KEGG:

id description
K09239 HIVEP; human immunodeficiency virus type I enhancer-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123072 lncRNA upstream 31995 17296821 ~ 17298245 (+) True G91512
TU123073 lncRNA upstream 50492 17275671 ~ 17279748 (+) True G91513
TU123066 lncRNA upstream 61823 17268116 ~ 17268417 (+) True G91509
TU123033 lncRNA upstream 126833 17201163 ~ 17203407 (+) True G91484
TU123038 lncRNA upstream 133252 17191603 ~ 17196988 (+) True G91487
TU123080 lncRNA downstream 8874 17358839 ~ 17447933 (+) False rcc1
TU123102 lncRNA downstream 120066 17470031 ~ 17470245 (+) True G91534
TU123106 lncRNA downstream 135500 17485465 ~ 17486028 (+) True G91537
TU123121 lncRNA downstream 158785 17508750 ~ 17508978 (+) True G91547
TU123202 lncRNA downstream 224579 17574544 ~ 17575784 (+) True G91597
XM_007251757.3 mRNA upstream 77543 17240552 ~ 17252697 (+) True LOC103041278
XM_022673669.1 mRNA upstream 388833 16829220 ~ 16941407 (+) False LOC103040229
XM_022673680.1 mRNA downstream 12168 17362133 ~ 17366470 (+) True LOC111193338
XM_022673684.1 mRNA downstream 33999 17383964 ~ 17438199 (+) False LOC103041872
XM_022673686.1 mRNA downstream 35879 17385844 ~ 17438199 (+) False LOC103041872
XM_022673685.1 mRNA downstream 37715 17387680 ~ 17438199 (+) False LOC103041872
XM_022673681.1 mRNA downstream 50853 17400818 ~ 17438199 (+) False LOC103041872
XR_002650442.1 other upstream 910860 16395214 ~ 16419380 (+) False trim71
TU122481 other upstream 2047185 15281509 ~ 15283055 (+) False LOC103025288
TU122479 other upstream 2051076 15276253 ~ 15279164 (+) False LOC103025288
TU122457 other upstream 2113732 15160215 ~ 15216508 (+) True alg14
TU122125 other upstream 3055542 14272064 ~ 14274698 (+) False eif1b
TU123306 other downstream 561936 17911901 ~ 17912443 (+) True G91678
LOC111193302 other downstream 998059 18348024 ~ 18350624 (+) True LOC111193302
TU123361 other downstream 998062 18348027 ~ 18361095 (+) True G91728
LOC111193341 other downstream 1001998 18351963 ~ 18352643 (+) True LOC111193341
LOC103024770 other downstream 1004198 18354163 ~ 18354889 (+) True LOC103024770

Expression Profile