RNA id: TU123862


Basic Information

Item Value
RNA id TU123862
length 548
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G92103
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 19953546 ~ 19954093 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCAAAACAAAAATTAATGGTAAATTCtctcatacattttaaatagtgtGATCCCAGTTGGAGCACTGGAAGAGTAATGGCCTCATCTCTAGCTGCCATCTCTGGtgtcagctctcatgagttaaTAGAGGAGATGAGAGCgcacaggaaaaaaatatctgCACTTTTCTGACAGGGAAGAAAGGAGAGCTTTCACAGGTCCATGTATCATTAAGCAATTGAGAAAGCTAATTAGAGCtagtggtggtgggggtggagATCTCGCACCTAATTATTGCCATAGCAACTGCATCTCTCATACGTGAGGTGTACAAGGGAGCACTGCTCCGTTCTGGAAAAGAAGAGGATTGAAACAGAGCAAGAGAGCCACCTAGTGCAGCAAAACTGTAATACAGTAACAGCGCAGGGTTACTGAAGAAAGCTCAATCTTCGAAGGCAAATCAGATAATTTGGGCATAATTGCTTATTAAACTGATGCAAAGCTAACTGAATTAAGAATTGTCTATTTAGAAAAGAAGAACAAATGCAAATACTATTTTATCCTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123796 lncRNA upstream 198074 19751286 ~ 19755472 (+) False LOC103022253
TU123792 lncRNA upstream 223571 19726890 ~ 19729975 (+) True G92054
TU123777 lncRNA upstream 302459 19648673 ~ 19651087 (+) False G92044
TU123778 lncRNA upstream 302459 19648673 ~ 19651087 (+) True G92044
TU123779 lncRNA upstream 302459 19648673 ~ 19651087 (+) False G92044
TU123863 lncRNA downstream 2000 19956093 ~ 19956982 (+) True G92104
TU123870 lncRNA downstream 23394 19977487 ~ 19980200 (+) True G92111
TU123901 lncRNA downstream 102886 20056979 ~ 20057256 (+) False LOC103028233
TU123902 lncRNA downstream 105027 20059120 ~ 20063047 (+) True G92134
TU123904 lncRNA downstream 109900 20063993 ~ 20064597 (+) True G92135
XM_022673731.1 mRNA upstream 198071 19731812 ~ 19755475 (+) True LOC103022253
XM_007249589.2 mRNA upstream 198071 19739713 ~ 19755475 (+) False LOC103022253
XM_015605866.2 mRNA upstream 198071 19739963 ~ 19755475 (+) False LOC103022253
XM_007251830.3 mRNA upstream 442670 19504446 ~ 19510876 (+) True LOC103035022
XM_022673725.1 mRNA upstream 478370 19464330 ~ 19475176 (+) True ebag9
XM_007249603.3 mRNA downstream 14157 19968250 ~ 19976308 (+) True LOC103026527
XM_007249601.3 mRNA downstream 35365 19989458 ~ 20004543 (+) True themis2
XM_007249607.3 mRNA downstream 58682 20012775 ~ 20016592 (+) True smpdl3b
XM_007249608.3 mRNA downstream 89609 20043702 ~ 20057320 (+) True LOC103028233
XM_015605869.2 mRNA downstream 171237 20125330 ~ 20130897 (+) True LOC103030656
XR_002650449.1 other upstream 1339829 18604038 ~ 18613717 (+) False LOC103028566
TU123412 other upstream 1461474 18491680 ~ 18492072 (+) True G91760
TU123393 other upstream 1532283 18400488 ~ 18421263 (+) True G91748
TU123391 other upstream 1532283 18417609 ~ 18421263 (+) False G91748
LOC111193340 other upstream 1592429 18358923 ~ 18361117 (+) True LOC111193340
TU124129 other downstream 865057 20819150 ~ 20821390 (+) False LOC103032252
TU124179 other downstream 987333 20941426 ~ 20945506 (+) True G92350
TU124348 other downstream 1315072 21269165 ~ 21352003 (+) True G92462
TU124346 other downstream 1321070 21275163 ~ 21352003 (+) False G92462
TU124347 other downstream 1321070 21275163 ~ 21352003 (+) False G92462

Expression Profile