RNA id: XM_007250450.3


Basic Information

Item Value
RNA id XM_007250450.3
length 1026
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC103042493
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9407931 ~ 9453824 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCGTTTGGCTGCTTTGGGCTGCGAAGAATCTTGGGAGTTATTGAGTTGACAGGGCTGGTCTCAGACGCTTGCTGCTGCCTGCTCAGTCTTGCTGGTTTCATTTCACTGCCTGTTGCTGCCTGTGTTTGTGACTCGGTGGGAAACACACCAGGTTATGGACTGTTAAGGACTTGTTTTGCCCAAAAAAGAAGAGCTTTAACGTGAATCTAACGTGAGCATGGGGAAGCAGAACAGCAAGCTGCGGCCGGAGGTGATGCAGGACCTGCTGGAGAGCACGGACTTCACCGAGCACGAGATCCAGGAGTGGTACAAGGGCTTCCTGCGAGACTGCCCCAGCGGACACCTCTCAATGGAGGAGTTCAAAAAGATCTATGGCAATTTCTTCCCCTATGGAGATGCCTCCAAGTTTGCTGAGCATGTGTTCCGCACATTTGACGCTAACGGCGACGGCACAATAGACTTTCGGGAGTTTATAATCGCACTCAGTGTCACTTCACGAGGGAAGCTGgagcagaaactgaaatggGCTTTTAGCATGTATGACCTGGACGGGAATGGATACATCAGCAAATCAGAGATGCTGGAAATCGTACAGGCTATTTATAAAATGGTGTCTTCAGTAATGAAGATGCCGGAGGACGAATCCACACCAGAGAAAAGAACAGAGAAGATCTTTAGGCAAATGGATACCAACCGTGATGGTAAACTTTCCCTGGAAGAATTCATCAAAGGGGCCAAGAGTGACCCGTCCATCGTGCGCCTGCTGCAGTGTGACCCTAGCAGTGCAGGACAGTTCTGAGAGCAGCCTCCGCCTCTTCCTCCTTCTCATCCTCctccattttatttatttatgggtTTTTATTTCCGTTTTTGATACACAGCAACTCCCTCTGGTCAAACATGGGGACATGATGGAGGGCCTCTGTCCCATCAGACTGAGCTTGACCAGATATAGGACTCCCTCAACACGCACACGCAATCTCTGCCCTCCCCCcattctctgtatctctctctctctgtatct

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120216 lncRNA upstream 82581 9343738 ~ 9344004 (+) True G89386
TU120206 lncRNA upstream 141470 9283577 ~ 9285115 (+) True G89379
TU120260 lncRNA downstream 18864 9470210 ~ 9491129 (+) False G89420
TU120271 lncRNA downstream 61761 9513107 ~ 9514226 (+) False G89429
TU120270 lncRNA downstream 62580 9513926 ~ 9514687 (+) True G89429
TU120279 lncRNA downstream 82296 9533642 ~ 9534283 (+) True G89436
TU120306 lncRNA downstream 152300 9603646 ~ 9608487 (+) True G89454
XM_007250447.3 mRNA upstream 72089 9350451 ~ 9354496 (+) True id4
XM_007250448.3 mRNA upstream 72089 9350454 ~ 9354496 (+) False id4
XM_007250445.3 mRNA upstream 196414 9219740 ~ 9230171 (+) True cep76
XM_022673481.1 mRNA upstream 196415 9221796 ~ 9230170 (+) False cep76
XM_007250446.3 mRNA upstream 214749 9203427 ~ 9211836 (+) True LOC103041465
XM_007250452.3 mRNA downstream 11320 9462666 ~ 9478447 (+) True LOC103043416
XM_022673484.1 mRNA downstream 27965 9479311 ~ 9489659 (+) True LOC103043727
XM_022673483.1 mRNA downstream 27968 9479314 ~ 9489659 (+) False LOC103043727
XM_007249819.3 mRNA downstream 176754 9628100 ~ 9634429 (+) True LOC103033624
XM_022673511.1 mRNA downstream 190841 9642187 ~ 9644541 (+) True LOC103041564
TU119784 other upstream 1177151 8246214 ~ 8249434 (+) False sumo1
TU119517 other upstream 1846625 7578610 ~ 7579960 (+) True G88849
trnap-agg_3 other upstream 2183608 7242906 ~ 7242977 (+) True trnap-agg_3
TU119113 other upstream 4302859 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 4619912 4796822 ~ 4806673 (+) True G88486
TU120304 other downstream 151425 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 1234311 10685657 ~ 10686056 (+) True G89805
TU120819 other downstream 1236920 10688266 ~ 10688820 (+) True G89806
TU120940 other downstream 1453298 10904644 ~ 10907172 (+) False LOC111193328
TU121370 other downstream 2684228 12135574 ~ 12138638 (+) False LOC103025787

Expression Profile