RNA id: TU120270


Basic Information

Item Value
RNA id TU120270
length 600
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G89429
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9513107 ~ 9514687 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTACTGTCTGGAAACTGCCTCTAAAgattcagacagacagacagatcgcTATAGAGAAACAATACGTTACTGACTGGTCCTCACTGTCCAGTGTGCCCTTCCCTCGTGCCTCTCCTTGGATGGATTCCATGGCAGTGCTGTAGAGTGCTTTCTGCGCTTGTGGCCTCCGTTGGTCTGGCGTCACTGCCCCCTCCGCCCCTTTGCTTTCTACTGTTCCGACACGTTCACGGCAGGCTTGATCCACATTATGAATTCCAACCAGCAAACTGTAATCCATAATCTTAAAGCTCTGCAATAACAGGCAATCCCTTTGGATGGTCTTGCTGAGAGCATTGTAATTGTCTGGTTCTAGCTGGATGCCCTCAGGCATGTCCTGAATGAAGTCCAGATCTTTATATGTGGGCACACCCTTCTCCCGCTCTTTAGGTGAGGCACGACGTTTGTATGTGGAGCCCTTCAGGTCGTATTTGAGATGCATCGGGACAGAGCGCGGCAGCAGGTTGTTCATCACAACAATTCGGATGTTCTTCCCACCAGACTGCACGCAGTACAGTCCGTAGAACTTGGGCAGTAGGGTTCTCTTGTTCTGGTTCAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120261 lncRNA upstream 22797 9427038 ~ 9491129 (+) True G89420
TU120260 lncRNA upstream 22797 9470210 ~ 9491129 (+) False G89420
TU120216 lncRNA upstream 169922 9343738 ~ 9344004 (+) True G89386
TU120208 lncRNA upstream 228811 9283577 ~ 9285115 (+) False G89379
TU120279 lncRNA downstream 18955 9533642 ~ 9534283 (+) True G89436
TU120306 lncRNA downstream 88959 9603646 ~ 9608487 (+) True G89454
TU120308 lncRNA downstream 88959 9603646 ~ 9608487 (+) False G89454
TU120309 lncRNA downstream 98035 9612722 ~ 9612980 (+) True G89455
TU120367 lncRNA downstream 277995 9792682 ~ 9793009 (+) True G89492
XM_022673484.1 mRNA upstream 24267 9479311 ~ 9489659 (+) True LOC103043727
XM_022673483.1 mRNA upstream 24267 9479314 ~ 9489659 (+) False LOC103043727
XM_007250452.3 mRNA upstream 35479 9462666 ~ 9478447 (+) True LOC103043416
XM_015606114.2 mRNA upstream 60102 9445387 ~ 9453824 (+) True LOC103042493
XM_007250450.3 mRNA upstream 62580 9426585 ~ 9451346 (+) False LOC103042493
XM_007249819.3 mRNA downstream 113413 9628100 ~ 9634429 (+) True LOC103033624
XM_022673511.1 mRNA downstream 127500 9642187 ~ 9644541 (+) True LOC103041564
XM_015605912.2 mRNA downstream 127500 9642187 ~ 9644541 (+) False LOC103041564
XM_022673351.1 mRNA downstream 130932 9645619 ~ 9667731 (+) True LOC103033304
XM_022673509.1 mRNA downstream 190976 9705663 ~ 9714894 (+) True m6pr
TU119784 other upstream 1264492 8246214 ~ 8249434 (+) False sumo1
TU119517 other upstream 1933966 7578610 ~ 7579960 (+) True G88849
trnap-agg_3 other upstream 2270949 7242906 ~ 7242977 (+) True trnap-agg_3
TU119113 other upstream 4390200 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 4707253 4796822 ~ 4806673 (+) True G88486
TU120304 other downstream 88084 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 1170970 10685657 ~ 10686056 (+) True G89805
TU120819 other downstream 1173579 10688266 ~ 10688820 (+) True G89806
TU120940 other downstream 1389957 10904644 ~ 10907172 (+) False LOC111193328
TU121370 other downstream 2620887 12135574 ~ 12138638 (+) False LOC103025787

Expression Profile