RNA id: TU120208


Basic Information

Item Value
RNA id TU120208
length 703
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G89379
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9283577 ~ 9285115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attagcacccctgatgttaatactttgtacaacccccttttgccaacaaaacagcacctaatcttctcctgtaatgtttcacaagatgggagaatacagaaagagggatctttgaccattcctctttgcacattctctctaaatcatccaacgacctgggtcctctcctctgcactctcctcttcagctcaccccacaggttttcaatggggttgaggtctgggggctgagatggccatgggaggagcttgattctgtgtgcggtgaaccatttctgtgtagatttggccacatgtttagggtcattatcttgctgaaagacccagtgacgacccatcttcagctttcgggcagaagccaccagattttgttttaaaatgtcctggtattttagagcattcatgatgccatgcaccctaacaaggttcccagggcctttagaagagaaacaggcccacagcatcactgatcccccgccgtatttcacagtgggcatgaggtgcttttctgcatactcagctcttgtgttacgccagacccacttagagcatttgttgccaaaaagctctatctttgtttcatctgaccaaagcacacggtcccagttgaagtcatagtaccgcttagcaaactccaaacgtttgcgtttatgattgtgagtgagaaatggtttcttccgtgcatgcctcccaaacagcttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120203 lncRNA upstream 16628 9247312 ~ 9266949 (+) True G89377
TU120175 lncRNA upstream 65545 9217818 ~ 9218032 (+) True G89355
TU120173 lncRNA upstream 67576 9212176 ~ 9216001 (+) True G89353
TU120170 lncRNA upstream 83620 9198431 ~ 9199957 (+) True G89350
TU120161 lncRNA upstream 101783 9179728 ~ 9181794 (+) True G89343
TU120216 lncRNA downstream 58623 9343738 ~ 9344004 (+) True G89386
TU120261 lncRNA downstream 141923 9427038 ~ 9491129 (+) True G89420
TU120260 lncRNA downstream 185095 9470210 ~ 9491129 (+) False G89420
TU120271 lncRNA downstream 227992 9513107 ~ 9514226 (+) False G89429
TU120270 lncRNA downstream 228811 9513926 ~ 9514687 (+) True G89429
XM_007250445.3 mRNA upstream 53406 9219740 ~ 9230171 (+) True cep76
XM_022673481.1 mRNA upstream 53407 9221796 ~ 9230170 (+) False cep76
XM_007250446.3 mRNA upstream 71741 9203427 ~ 9211836 (+) True LOC103041465
XM_022673479.1 mRNA upstream 113036 9168060 ~ 9170541 (+) True LOC111193323
XM_022673478.1 mRNA upstream 116372 9157067 ~ 9167205 (+) True LOC103039510
XM_007250447.3 mRNA downstream 65336 9350451 ~ 9354496 (+) True id4
XM_007250448.3 mRNA downstream 65339 9350454 ~ 9354496 (+) False id4
XM_007250449.3 mRNA downstream 122816 9407931 ~ 9451303 (+) False LOC103042493
XM_007250450.3 mRNA downstream 141470 9426585 ~ 9451346 (+) False LOC103042493
XM_015606114.2 mRNA downstream 160272 9445387 ~ 9453824 (+) True LOC103042493
TU119784 other upstream 1034143 8246214 ~ 8249434 (+) False sumo1
TU119517 other upstream 1703617 7578610 ~ 7579960 (+) True G88849
trnap-agg_3 other upstream 2040600 7242906 ~ 7242977 (+) True trnap-agg_3
TU119113 other upstream 4159851 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 4476904 4796822 ~ 4806673 (+) True G88486
TU120304 other downstream 317656 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 1400542 10685657 ~ 10686056 (+) True G89805
TU120819 other downstream 1403151 10688266 ~ 10688820 (+) True G89806
TU120940 other downstream 1619529 10904644 ~ 10907172 (+) False LOC111193328
TU121370 other downstream 2850459 12135574 ~ 12138638 (+) False LOC103025787