RNA id: TU120308


Basic Information

Item Value
RNA id TU120308
length 540
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G89454
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9603646 ~ 9608487 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaggtgtcgtgggcctaattcagcgaaacactgacgaaggaaggtgcctgcctgatgacccctgagaagagcttgcactgaagtttgtgtttaagtttggatgaaggggattggtgtggtcctgctcttgtaataatttgtctcatgagtttttgtagacgtctgagtacttggcagttgaggcacggaccatgaacatagttcgctatgcttctggattcttgtcgagccagtatcagatggtagtggttgctgtgttctgctcacgcaacttataatgtgatttattgtgtgtgattgtgcttaggtaagtgtgttgttgccatagttaaaggaagtgagcttagattaaggagggattctatgtgttcataggttattttttggtaggtctgttacttggcagttgaggcaatggaccatgaacatagtgttaggctgtgcttctggattcttgtcgagccagtatcagattgtggtggttttgctattgttgttagttgagtgagtagtagatcctggctgagccctatgcataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120279 lncRNA upstream 69363 9533642 ~ 9534283 (+) True G89436
TU120270 lncRNA upstream 88959 9513926 ~ 9514687 (+) True G89429
TU120271 lncRNA upstream 89420 9513107 ~ 9514226 (+) False G89429
TU120261 lncRNA upstream 112517 9427038 ~ 9491129 (+) True G89420
TU120309 lncRNA downstream 4235 9612722 ~ 9612980 (+) True G89455
TU120367 lncRNA downstream 184195 9792682 ~ 9793009 (+) True G89492
TU120527 lncRNA downstream 376387 9984874 ~ 10000908 (+) False iffo1
TU120537 lncRNA downstream 403663 10012150 ~ 10012423 (+) True G89619
TU120543 lncRNA downstream 481397 10089884 ~ 10094504 (+) True G89624
XM_022673484.1 mRNA upstream 113987 9479311 ~ 9489659 (+) True LOC103043727
XM_022673483.1 mRNA upstream 113987 9479314 ~ 9489659 (+) False LOC103043727
XM_007250452.3 mRNA upstream 125199 9462666 ~ 9478447 (+) True LOC103043416
XM_015606114.2 mRNA upstream 149822 9445387 ~ 9453824 (+) True LOC103042493
XM_007250450.3 mRNA upstream 152300 9426585 ~ 9451346 (+) False LOC103042493
XM_007249819.3 mRNA downstream 19613 9628100 ~ 9634429 (+) True LOC103033624
XM_022673511.1 mRNA downstream 33700 9642187 ~ 9644541 (+) True LOC103041564
XM_015605912.2 mRNA downstream 33700 9642187 ~ 9644541 (+) False LOC103041564
XM_022673351.1 mRNA downstream 37132 9645619 ~ 9667731 (+) True LOC103033304
XM_022673509.1 mRNA downstream 97176 9705663 ~ 9714894 (+) True m6pr
TU119784 other upstream 1354212 8246214 ~ 8249434 (+) False sumo1
TU119517 other upstream 2023686 7578610 ~ 7579960 (+) True G88849
trnap-agg_3 other upstream 2360669 7242906 ~ 7242977 (+) True trnap-agg_3
TU119113 other upstream 4479920 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 4796973 4796822 ~ 4806673 (+) True G88486
TU120818 other downstream 1077170 10685657 ~ 10686056 (+) True G89805
TU120819 other downstream 1079779 10688266 ~ 10688820 (+) True G89806
TU120940 other downstream 1296157 10904644 ~ 10907172 (+) False LOC111193328
TU121370 other downstream 2527087 12135574 ~ 12138638 (+) False LOC103025787
TU121367 other downstream 2546410 12154897 ~ 12156862 (+) True G90199