RNA id: XM_022673446.1


Basic Information

Item Value
RNA id XM_022673446.1
length 2751
RNA type mRNA
GC content 0.41
exon number 11
gene id boll
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7746874 ~ 7760984 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGGGAATGTTCCATTTCTGCTGATTGCTGGGGGAACTGACCCCAACACTCtaactgttttaatttaataacttgTTTAATTTTCTGGTGCAAAATATCTCTGTTATGTATAAAACAACTATTagattattttgtttctgtgttaAAGTTGTAGAGGGGCTGTATTTGAAATGGTTCTGGTTGTGTAAGTTTTGGGCTCTGCTGTAGTTCAGCCAGTGTTTTGGTGACCGctgtctcgttttttttttttcttattttgtagCTGATTTGAGGTCTAGTTGAAGCTTTAGGGTCCTTATCGCTTCTAAAGGAGTGCTGTTCACTCCGCGGCCGAGTTTATGAAGTGATTCTGCTGCTGATCTCCGCAAGCCGACCCCCGTCCAGCCCGAGAGATGGAGAACGATGCCGGGACCCAGACCAGCTCTCCATCCACCAGTCCGGCTCCTGTCGAAATAAGTAACACTCTGCACCAAGCTTCCCATACCGGCACAGTCATCCCAAACCGGATCTTTGTAGGGGGGATCGGTGGTAAAgCTAAGGAAAATGATCTAAGGTGTTTTTTCTCTGAATACGGAGTGATCAGAGAAGTGAATATTGTTACTGATCGAGACGGAATATCAAAGGGATATGGCTTTGTTACATTTGAAACTCAGGAAGATGCACAGAAAATTCTACATGATGCTGACCGACTTTCTTTTCGTGATAAAAGGATAAACGTGGGCCAGGCATTCCGCAAACAACTGAAAGGACACTACAGCTATACTGCGGATACTCAGGGTTCATCTATGGCTTATCAAGCTCCTTTTGGCACCACATACCTGACCACCCCTACTGGATATCCCTACACCTACCACAATGGAGTGGCCTACTTCCACACACCAGAGCCCAACACACTGAGCCCCTCACACTGGCATGCTCCACCCCACACGATGTCTGGATCGTCCGTCATGGTGACCCACTCTGCCTCTTCCATCTGCATCCCACAACCCTACCACAATTCACAGGCTTCTTCTCAGTATGTGCCCGGACACGTGCCATGGACCATTCCTCAGGTAGAGGCTTCTTCACAGTATGTGTCTGGACATGTGCCATGGACTATTCCTCAGACCTCCGTCCCTGTGAATCCAAGTTCTTTATCATGCATCCAGCCTGCTGAGGTAATGTACCAGCCCATGGAGATGCCAGCAGAGAATTGGTGTTTCCAGTCAGCCATGCCATTAATGGAGGCTACAATTCCTGAGGAGCAAAGATTTCACCCAGTCAGACGAAGCTTCTCCCGCTCTGCGGCCCACTTAAAGCCCAGGTACCACCACGGCCATCGTTACACTCACCTGCACAAGAACTACCGCCCGGATGTGTACCAGGCATTCCCAGCATCCCCAGCTCCTGCTTCTTCTCCTGGCCTGGAGATGCCGATATAGAGACCTTTTCCCAGCTCCTTTTCTGTGTTCACACTAAGCTCTAACCACACCTTACTCCAAATCTCTGACCAACCTAACCCTACAGAAATAAGCTTTTACCAAACACAGACTTAGACCTTAATAAGTCTATACTATAAAGAACATGCTCTCTACCAGGCCTACACTACAGCTGGTCCTGACTGTACACACAGAAATACTGCATCTAAAGACAATCGAGGTGATAACAGTCTCTCAACCAGTAAATGTGCCTTAAATAACAAGTAATGACTTTTGGAAATAACTATATTATGGCAGATTTATTTGACTTTATAAGCCTGTTGAATTCATTTATTAGGCAACCTAGactattcactcactcactgttgtatgtaatatctaaaataattgtttaatagtaatagtaatagtaaaacaagaaagagcacagtttaatctgttaaaagagactttttgaaaaaaaaaagaggaatatTTTCCCTCACAATATAACCATCTTTGTAATGTCATTGCAGCTTTGCAAAGATGTCATGGAAgtgatattataaaaaataaattttacatttactcatTTGAGTATCAAAAATGACCTTCGAAATTAACAGTGAATTCAGCCCTGTGGAATATACTatgcataaaaaatgaaaatatctgGGTTACAATATATTCAAGATTTGATTGTACTTAATGTTCAACTTAATGTTTCTATTCTTAAACCAGTGgtctccctccctcctcctgGAGATTTACCTTGTTAGAGGTTTTAGCTCCAATCACATCAAACACAATACATTTCACATTTACAACCAAGAAGTTCTGTACACAGATATCAAATCGATCTGGTGAGGTGGATTGAGGAAGAAATGAAAGTCTGCATAAGGTAGTTCTCCAGGAGCAGGGTAAAGACCACTGGCTTTTAAACTCACTGTGCTAAACACAATGTTGAGTAGTGCATAGAAAAAGATGTTCAACTACCAGACATTCAGTAAATGCCAAGTTAGCCAGTCCATATGTTTACTAAGACAGACTCCATAAACTACCAGTGCCTTCAGGAAATAGTGCACATGCTCTGGATGTTACTGCTTTTCTACTTTTATACAAAAAGAATGATGTCATCGCattcttttttatatactttatagtttttaagtaaCTCTCGATATTGCTATACAATTTTCTTACATCACTGCAGTCACACTAATCTAAGATCAGCTCCTCCAACCAACCACActtacatatttaataaaacaaattaaacaatcTATCTATATGACAAATTATATCTGCATATATGTAGTCTGTCTTTTTAGCATTCCGGTTTAGAAATCTACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119604 lncRNA downstream 104096 7598802 ~ 7642778 (-) True G88923
TU119500 lncRNA downstream 331389 7415058 ~ 7415485 (-) True G88833
TU119491 lncRNA downstream 364777 7325465 ~ 7382097 (-) True G88824
TU119423 lncRNA downstream 532457 7209748 ~ 7214417 (-) False LOC103026131
TU119434 lncRNA downstream 569260 7175374 ~ 7177614 (-) False G88781
TU119749 lncRNA upstream 308420 8069404 ~ 8069620 (-) True G89035
TU119743 lncRNA upstream 314900 8075884 ~ 8079057 (-) True G89029
TU119750 lncRNA upstream 318080 8079064 ~ 8079780 (-) True G89036
TU119753 lncRNA upstream 320389 8081373 ~ 8081590 (-) True G89038
TU119798 lncRNA upstream 481366 8242350 ~ 8243320 (-) True G89067
XM_022673442.1 mRNA downstream 11417 7706002 ~ 7735457 (-) False kynu
XM_022673441.1 mRNA downstream 21444 7706002 ~ 7725430 (-) False kynu
XM_022673440.1 mRNA downstream 21444 7706002 ~ 7725430 (-) False kynu
XM_022673438.1 mRNA downstream 21444 7706002 ~ 7725430 (-) False kynu
XM_022673439.1 mRNA downstream 22889 7706002 ~ 7723985 (-) True kynu
XM_022673452.1 mRNA upstream 100451 7861435 ~ 7873399 (-) False iqcb1
XM_022673450.1 mRNA upstream 100451 7861435 ~ 7873399 (-) True iqcb1
XM_022673453.1 mRNA upstream 113942 7874926 ~ 7885865 (-) False ccdc14
XM_007248884.3 mRNA upstream 113942 7874926 ~ 7885865 (-) True ccdc14
XM_007248883.3 mRNA upstream 324585 8085569 ~ 8115611 (-) True LOC103027002
TU119448 other downstream 504304 7241711 ~ 7242570 (-) True G88789
TU119427 other downstream 628748 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 3151549 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 3180670 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 4055410 3606470 ~ 3691464 (-) False lyrm4
TU120441 other upstream 2041787 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 2133841 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 2200298 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 2278573 10039557 ~ 10042853 (-) False LOC103025178
TU120738 other upstream 2462536 10223520 ~ 10224663 (-) True G89751

Expression Profile