RNA id: TU104775


Basic Information

Item Value
RNA id TU104775
length 241
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G77684
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2392876 ~ 2393116 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtcttggtcacagatgctccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcccccataatgttgtgtgcattgcaatatttagagcagaactgtgctcttaccctgctaattgaacctccatactcttacagctcttactggtgcaatgtgcaattaatgaagattgatcaccaggctgctccaatttagccatgaaacctaaaatcccacattaaaatgatg

Function

GO: NA

KEGG:

id description
ko00380 Tryptophan metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104774 lncRNA downstream 32940 2359731 ~ 2359936 (-) True G77683
TU104741 lncRNA downstream 207013 2183986 ~ 2185863 (-) True G77655
TU104714 lncRNA downstream 227929 2127525 ~ 2164947 (-) True G77639
TU104724 lncRNA downstream 246603 2087617 ~ 2146273 (-) True G77641
TU104705 lncRNA downstream 345635 2042998 ~ 2047241 (-) False LOC111193168
TU104790 lncRNA upstream 55457 2448573 ~ 2469056 (-) True G77695
TU104793 lncRNA upstream 58306 2451422 ~ 2477759 (-) True G77696
TU104794 lncRNA upstream 80904 2474020 ~ 2477759 (-) False G77696
TU104806 lncRNA upstream 108231 2501347 ~ 2512338 (-) True G77705
TU104860 lncRNA upstream 320045 2713161 ~ 2809766 (-) True G77749
XM_015606920.2 mRNA downstream 61500 2316627 ~ 2331376 (-) True thbs1
XM_022672457.1 mRNA downstream 160444 2221508 ~ 2232432 (-) True LOC103039711
XM_007230346.3 mRNA downstream 237528 2151158 ~ 2155348 (-) False gchfr
XM_007230345.3 mRNA downstream 237528 2151158 ~ 2155348 (-) False gchfr
XM_022672589.1 mRNA downstream 258441 2129198 ~ 2134435 (-) True LOC103030988
XM_022672593.1 mRNA upstream 39039 2432155 ~ 2457592 (-) True acp7
XM_007257929.3 mRNA upstream 39039 2432155 ~ 2457017 (-) False acp7
XM_007257925.2 mRNA upstream 85020 2478136 ~ 2505873 (-) True LOC103025843
XM_022672459.1 mRNA upstream 280300 2673416 ~ 2752256 (-) True LOC111193124
XM_007257924.3 mRNA upstream 476380 2869496 ~ 2875636 (-) True LOC103025537
TU104742 other downstream 202223 2190313 ~ 2190653 (-) True G77656
TU104721 other downstream 237536 2150788 ~ 2155340 (-) True gchfr
TU104716 other downstream 237536 2151155 ~ 2155340 (-) False gchfr
TU104718 other downstream 237536 2151438 ~ 2155340 (-) False gchfr
TU104704 other downstream 345635 2042998 ~ 2047241 (-) True LOC111193168
TU104917 other upstream 804013 3197129 ~ 3206216 (-) False bmf
TU105040 other upstream 904466 3297582 ~ 3348989 (-) True G77892
XR_002650301.1 other upstream 1239978 3633094 ~ 3638915 (-) True LOC111193170
TU105108 other upstream 1298491 3691607 ~ 3714277 (-) False prkd1
TU105210 other upstream 1441446 3834562 ~ 3840570 (-) True G78023

Expression Profile