RNA id: TU15571


Basic Information

Item Value
RNA id TU15571
length 214
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G11558
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18825499 ~ 18825712 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTAACACCTGCACCTTTAAGATCAGCCTCACCGGAGTACTAATAAGCTGACTCCGCCCATCCCACACACCTGTGGGACATCAGCTTATTACTGAGACTATTTATACTGGGACTTTACCAAGTCTAGTTGCGAGATATTGCCACTCTAGTGTCTTATCGAGCGTTTAcgtctgtgtttattatatcTGGTTTTTTGAtccttgcctgtttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15570 lncRNA upstream 566 18824711 ~ 18824933 (+) True G11557
TU15561 lncRNA upstream 60475 18744957 ~ 18765024 (+) True G11549
TU15559 lncRNA upstream 93189 18732075 ~ 18732310 (+) True G11547
TU15557 lncRNA upstream 97112 18728110 ~ 18728387 (+) True G11545
TU15520 lncRNA upstream 121121 18647879 ~ 18704378 (+) True G11517
TU15572 lncRNA downstream 1738 18827450 ~ 18827789 (+) True G11559
TU15575 lncRNA downstream 9602 18835314 ~ 18837034 (+) True G11562
XR_002650998.1 lncRNA downstream 12926 18838638 ~ 18873245 (+) True LOC111194223
TU15677 lncRNA downstream 288268 19113980 ~ 19197419 (+) True G11638
TU15710 lncRNA downstream 411201 19236913 ~ 19246515 (+) False G11658
XM_007260521.3 mRNA upstream 11910 18793024 ~ 18813589 (+) True LOC103038931
XM_007260520.3 mRNA upstream 13289 18793023 ~ 18812210 (+) False LOC103038931
XM_007231038.3 mRNA upstream 113236 18706505 ~ 18712263 (+) True colca2
XM_007231039.3 mRNA upstream 113247 18706505 ~ 18712252 (+) False colca2
XM_022674407.1 mRNA upstream 125916 18674803 ~ 18699583 (+) True LOC107197920
XM_022674520.1 mRNA downstream 229420 19055132 ~ 19068641 (+) True LOC107197927
XM_015608649.2 mRNA downstream 234335 19060047 ~ 19068641 (+) False LOC107197927
XM_022674529.1 mRNA downstream 247903 19073615 ~ 19117179 (+) True LOC103023445
XM_022674542.1 mRNA downstream 297558 19123270 ~ 19191589 (+) False LOC103040710
XM_007260523.2 mRNA downstream 348602 19174314 ~ 19191589 (+) True LOC103040710
XR_002650987.1 other upstream 1685720 17139425 ~ 17139779 (+) False LOC111194200
TU14698 other upstream 2865121 15952846 ~ 15960378 (+) True G10879
TU14653 other upstream 3056256 15758762 ~ 15769243 (+) True G10838
TU14654 other upstream 3061095 15758762 ~ 15764404 (+) False G10838
TU14628 other upstream 3170161 15650282 ~ 15655338 (+) True G10825
TU15744 other downstream 587132 19412844 ~ 19424064 (+) False LOC103043893
TU16384 other downstream 2137337 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other downstream 2140576 20966288 ~ 20972094 (+) False LOC103033739
trnan-guu other downstream 2150492 20976204 ~ 20976277 (+) True trnan-guu
TU16611 other downstream 2634138 21459850 ~ 21463649 (+) True G12362

Expression Profile