RNA id: XM_007232859.3


Basic Information

Item Value
RNA id XM_007232859.3
length 1059
RNA type mRNA
GC content 0.43
exon number 6
gene id emc9
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20998115 ~ 21002011 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTGGTGTGCAGGCAGTGGGGGGCGCTAAGCTCCTCTGGTCTGTGGTCTGCGGTAAATCcacaggaggagaagaagaacgcAGTCAGGTTTCTTTGTGTTCTTTAGGTTTAGTGGATATTTCTGATCGATTTTCCACGTTCTCTGATTATTTCTCGTCCTTTTTCCCCATCTATAATTGTTTATATAAACAGCAGCGGAAGTGAAAATGAGTGAAGTGGAGCTGTCATGTTTGGCTTATGTGAAAATGTTCCTGCACGCCAGCCTGTTTCCCCACTGCAGTGTGAACGGGCTGCTGTTATCCTCCAGTTCATCTGAGGGCCCTGTGTGTGTTACAGACTGTGTTCCTCTACTTCACTCCCATTTATCGCTGGCTCTCACGACACAGCTAGCGCTTACTCAGgtggaTGTATGGTGTGCACAGACACAGCAGAGGATCGTGGGATATTATCAGGCTAACGCATCTCTATCAGATAGCAGcccATCACCATGTGCTCTGAAAATTGCAGATAAGATCGCGGAGCAGTACAGTAATGCAGTTCTACTGATGattgATGGTAGGAAAATGTCCCCAGACTACCGTGTTCCCCCAATAGTGATGTATGAACATAAAGACTCTCGCTGGACCCTTAAAGACAAACACACAATAATGCTTCATCAGTGGGAGGAGACACGTTTGATTGCCAGCCAGCTGCTGAATTCATTGGATCGCACGCTCCTGGTGGATTTCGACAGCCATTTGGATGACATAAGGAAAGACTGGACCAATCAGAAGCTAAATGCCAAGATTATGGAGCTGGCCTCTCCGGCTAATGGCAGCATGTGAATTGTGTAGAGACATTATCACATAGATAGAATATGCTgagtaatttatttaatgtagaGAATATCTGATTTAAACACTTGGAACAATTTTTTTGGATATCTGATATTTGTCTTATATGCACATGTATAACACTACTGTATTTGAATATGAGTTATAATAATATGGATGTTGAGAAGATGATTGTGTGCTGAAAGATGAGGTACATGCTTGTCTAATAAATTCATACtaaaacaa

Function

GO: NA

KEGG:

id description
K23569 EMC8_9; ER membrane protein complex subunit 8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51331 lncRNA upstream 16352 20903077 ~ 20981763 (+) True G38062
TU51327 lncRNA upstream 122839 20874796 ~ 20875276 (+) True G38059
TU51267 lncRNA upstream 207989 20783931 ~ 20790126 (+) True G38010
TU51212 lncRNA upstream 486929 20509679 ~ 20511186 (+) False G37974
TU51364 lncRNA downstream 42501 21044512 ~ 21048104 (+) False G38081
TU51365 lncRNA downstream 42501 21044512 ~ 21083648 (+) False G38081
TU51366 lncRNA downstream 42501 21044512 ~ 21048104 (+) False G38081
TU51362 lncRNA downstream 42533 21044544 ~ 21048104 (+) True G38081
TU51377 lncRNA downstream 116218 21118229 ~ 21128741 (+) False lgi1
XM_007232858.3 mRNA upstream 1458 20990981 ~ 20996657 (+) True LOC103033426
XM_007232853.2 mRNA upstream 132330 20862649 ~ 20865785 (+) True med9
XM_022669328.1 mRNA upstream 186973 20800120 ~ 20811142 (+) True nt5m
XM_022669423.1 mRNA upstream 264444 20725051 ~ 20733671 (+) True tnfrsf13b
XM_007232850.3 mRNA upstream 289258 20702260 ~ 20708857 (+) True LOC103031004
XM_007232861.3 mRNA downstream 29891 21031902 ~ 21043890 (+) True cep55
XM_022669333.1 mRNA downstream 53557 21055568 ~ 21077901 (+) True pde6c
XM_022669334.1 mRNA downstream 107069 21109080 ~ 21128764 (+) True lgi1
XM_022669335.1 mRNA downstream 140575 21142586 ~ 21144194 (+) True slc35g1
XM_022669336.1 mRNA downstream 164557 21166568 ~ 21296823 (+) True plce1
TU51173 other upstream 839776 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 1513200 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1666454 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 2100743 18897302 ~ 18897372 (+) True trnag-ccc
TU50610 other upstream 2621770 18371378 ~ 18376345 (+) True G37531
TU51357 other downstream 17158 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 164557 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 2745458 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2745560 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2745662 23747673 ~ 23747745 (+) True trnar-ccu_3

Expression Profile