RNA id: TU147743


Basic Information

Item Value
RNA id TU147743
length 1701
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G109379
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 7045919 ~ 7049644 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atttcagttcaaaatatttgtaattatttatttctacatctcttaaaatggtaaaattgaattattgcaatattaaatcACCATTATATTGTAAAGCTGCCTGAGCCCCGCCTTCAATTAGACTTAAATCACTGCTTCTTTAATCCACTCTTTAggctaaataaacaataaacctgaggtgaagaatattggttgaaattcagtgaaataaaaacactaataaatctataattcctggtatttgcttatttagtattttatcctctGCTGTAAATTATCATAGAGaaatgtattgtaaaatatatcgAGTAtagcagaatcacagtatcgtgatatcGTTATAGTGGGGAACATATCGTACTGCGATTCCCATCCCTatagtttagaaataaataaaattattttagatagtaaataaaattacatctGGAGTAGCCCTGCCAGGATTaccattttgtttttcttctgaaCGATATGCTGTCccagaaattaataaaatacaataaacaatagTATTCAGTcattttaagagcatttttacCTGGCCAGTATAACTGTTTGGAtcggactggctgtagaaacctttgactgggattcccgccatcaCGTTTTAAATCAGTTGagtctccatatgaggccaatgggtcaatgttttttttttatgtatcatgGTGCAAAGAAGCAGAAATataatgtccccatatgaggacacagGGACTCAATAGGATATAATGGtgatataatattgcaataatgtcattttataatttttaaggaattaaaaaaatatatatcgaGTATTGCAGAATTACAGTATTGTGATGTCATCAATATTGTGGGGAACATATCGTACTGTAATTTCCACCCATATAGTTtagatagtaaataaaataaaatggctatattataattattattattattattattaaattaatgttgTAATTTCAGTAAGTTTTCTACAGTGAAGCATAAATTCACACCAAACCAAAGCAGCACtttatctcacacacacacacacacacacacacacactacgtTATGCAAATAATTCTCAAAAAATCAGCGTATTTGCCCTTTAACGTTTCTCCATGCTGTTCCAGCGCTCAGAGCTGCTGAAGGCGGGGTTAATGCATGCTCAGAGCTCCTGATGTTCGGCTGCTTGTGATTAAATCATCAGTAATGGCCAGTGTTCAGTAAAGTTACAGTACTGTAAGCTCTTAGAGACATTAAACCCAGTGTACGCAGGATCACGGCGCTACAGAAGATTAAATAAAGAAGCTCATCCTGATCTGAGATCCACAGCGATGAGCGTCTCTGTCCtttcctttattttacttttttctttttcttgttttttttttttttgtccaagtAGCTCCAGTATTCCCATGTGGACCAATCACACAATTCAAACCATGGTATGTGATCTTTTATTGTGCAATAAAAGATGACTTTCAACTTTCAACTCGACGTGTTCAGAGTGGTTCATTTTACAGTCTATTTACTGTATGATAGCTTTTGCTCCAGAAGCAGCCTAAGATCacgcaaaagcagtgtgtaaatctggtggaggagaagatgatGCCTTTGAGACACATGAAAGCTTAAAGTGGGTAAAAATAatcaaggttattccaccaaatattgatttctcaactCAAATAACCTGATTTAAATCCTCTGGAAAACTTtgtaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147740 lncRNA upstream 2325 7042430 ~ 7045381 (+) True G109378
TU147739 lncRNA upstream 3456 7042430 ~ 7044250 (+) False G109378
TU147723 lncRNA upstream 62214 6944765 ~ 6985492 (+) False blcap
TU147691 lncRNA upstream 180793 6731144 ~ 6866913 (+) True rims4
TU147751 lncRNA downstream 1964 7051608 ~ 7052796 (+) True G109381
TU147758 lncRNA downstream 4053 7053697 ~ 7054999 (+) False G109385
TU147757 lncRNA downstream 4957 7054601 ~ 7054999 (+) True G109385
TU147759 lncRNA downstream 7981 7057625 ~ 7057858 (+) True G109386
TU147760 lncRNA downstream 9611 7059255 ~ 7059511 (+) True G109387
XM_022675061.1 mRNA upstream 6172 6995770 ~ 7041534 (+) True LOC103032809
XM_007258486.2 mRNA upstream 100095 6944776 ~ 6947611 (+) False blcap
XM_007258487.2 mRNA upstream 118965 6922550 ~ 6928741 (+) True psmf1
XM_022675306.1 mRNA upstream 237448 6774176 ~ 6810258 (+) False rims4
XM_007258492.3 mRNA upstream 306381 6733283 ~ 6741325 (+) True tomm34
XM_015608180.2 mRNA downstream 21051 7070695 ~ 7072091 (+) True LOC103023115
XM_007258510.3 mRNA downstream 48870 7098514 ~ 7100475 (+) True LOC103032506
XM_022675310.1 mRNA downstream 52752 7102396 ~ 7106549 (+) True LOC111193722
NM_001291266.1 mRNA downstream 87134 7136778 ~ 7155237 (+) True LOC103022304
XM_022675332.1 mRNA downstream 303815 7353459 ~ 7420339 (+) True LOC103031557
TU147724 other upstream 77127 6944765 ~ 6970579 (+) False blcap
TU147722 other upstream 100104 6944765 ~ 6947602 (+) True blcap
TU147548 other upstream 792649 6253210 ~ 6255057 (+) False G109248
TU147549 other upstream 792649 6253210 ~ 6255057 (+) True G109248
TU147542 other upstream 881044 6164599 ~ 6166662 (+) True G109242
TU147963 other downstream 218227 7267871 ~ 7269592 (+) True G109527
TU147984 other downstream 392325 7441969 ~ 7448990 (+) False gbx2
TU148012 other downstream 647505 7697149 ~ 7699958 (+) False LOC103043571
TU148077 other downstream 811176 7860820 ~ 7861432 (+) True G109613
TU148079 other downstream 811176 7860820 ~ 7861432 (+) False G109613

Expression Profile