RNA id: XM_007258492.3


Basic Information

Item Value
RNA id XM_007258492.3
length 2091
RNA type mRNA
GC content 0.43
exon number 8
gene id tomm34
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 6733283 ~ 6741325 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCTCCGGAGCCGGTGTTAGCGGCAGCGTGCTGTACCGGTTTCAGAGCGAGCTAACAGCTAACCGGCTGCTTTTCTAGCATTTTCTGGAAGGAAGCCGCTTAAACTCCGGGtgtttagtgataaaactcgcTTTACAGggtttaacttttaataaacctCTCTTTATTTCCTTCCAGGACATTTAAAGtgAAATAAACAGGTAAAATGCCCCAGAAGCGGCGCTCTCAGTCCTGGGCTGAGCTGAAACAGGCCGGGAATGAGTGCTTTAAGGCCGGGCAGTACGGAGAGGCTGTGTCGCTGTACAGTCAGGCCATCAGCGCGCTGGAGAAATCagGTCAGAAGAAACCGGAGGATCTGggtattttatattctaatcGAGCTGCCAGTTATTTAAAGGATGGAAATTGCAATGAATGCATTAAGGACTGCACAGTGTCTCTGGATCTCGTCCCGTTTGGGATTAAATCTTTGCTTCGTCGTGCTGCAGCTTATGAGGCCGTGGAGAGATACAGACAAGCTTACGTGGATTATAAAACCGTGTTACAGATAGACTGCAACTTACCTGCAGCTCACGATGGAACCAACAGAATGTCCAAGGCTCTGACAGACATGGACGGTCCTTCCTGGCGAGAGAAGCTTCCTCCGATCCCCACGGTTCCTCTCGCAGTGAAGGAGAAACTACTGCAGGCTACGAGTCCCACAACCCCCACAACCCCCACAGCACAGCAGAATGGCGTAGTGGAGAACAGCAAACAAAGCAGTAAAAAGGATGGAGATGTTAAAAAGGCCAGAATTCTGAAGGAGGAAGGTAATTCTTTGGTGAAGAAAGGAGAGCACAAGAAGGCCATTGAGAAATACACacagtctctcagtcaggaCCCGACAGAAGTCACAACATATACAAACAGGGCTCTGTGCTACCTGTCTCTAAAGCTGTACCGGGACGCTGTGCGGGACTGTGAAGAGGCTCTGAGACTCGACTCTGTTAATATTAAAGCTCTGTACAGGCGCGCACAGGCTTATAAAGAGCTGAAAGATAAGAAAGCCTGTGTGCAGGATCTCAACAGCTTGCTGAAGATCGAGCCAAAGAACACAGCGGCGCAGAAGCTCCTGCAGGAAGTCCAGAAGATGAAATAACCTGATCTTTATTCTGAGGATCCCACAGACATGAGGAATGCAGTCCCTCCAGTGCCTCTATTAAAACCTGCCTTTTAGAACTGCGTCACCCCATCAGACCTTCAGCACCGCACGCTTGTGTTTCACGGAGATGATGGATTGATCgattgattggttaattgattTTGTTTAGTTAAGCAGGCGTATAATATCTCTTATAATACCATCAGCCAAATATCATCAGTTTCCTCACTTTTACATATTTCCCATCCGTCCTCATTCATTTACTGCATTTTAATCCTGGAAACAAAAGTAGCAAAAGTTAATCTGCACCTGCTTTGATTGATTTGTAGTTCATTGATCATCAAGGAATGCAAAGTAAAATCTGGACTTTTctttattgtgttgtattgattgattgatcttgGTCTGGTCAGTCCTCGGACATCTGCACTGTCTCGGTTCTCTAATAGTAGCTAAAGTAAGGGTTTGTTATGCAATTTAAGCAATTAATGTACTGTCCTTCAATAAGaaataaaactgcactgctgtgttttacttttatcagggtaaagtgattaaaaaacgttgtttactttgtttaagAGGTTGTTCTTGCTTACAGTTAACTTATCCGTAAAGTATCTGTGCCTCATTGATAAACTACAAACTCAGAAAACTTCAGAACTTATCGttttagttgtgtgtgtgtgtgcaagtaaAAGCAGAATTTACTCATACAAAGGAAAGATGTTCACTGCTGATGATGATGTTATAATAACTACGTAACTACAGGATGAGTAAATGCAGATGTTTTGGTTTTGTACAGAAAGCAATGGATTGAACCAAACGTCAGCTCCAGTCGTTATAAGTGATTTTGTAAGAAACGTTGGTGTTTATTCTAATCATTCTGGAACTGCCCCTCTTCTACATGTTAACGTTCGACAActacaataaagaaaaagcttttaaa

Function

GO: NA

KEGG:

id description
K17766 TOM34; mitochondrial import receptor subunit TOM34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147642 lncRNA upstream 116420 6615447 ~ 6616863 (+) True G109318
TU147591 lncRNA upstream 134795 6595157 ~ 6598488 (+) True G109278
TU147582 lncRNA upstream 253918 6421247 ~ 6479365 (+) True G109269
TU147564 lncRNA upstream 413185 6318707 ~ 6320098 (+) True G109261
TU147550 lncRNA upstream 484267 6248588 ~ 6249016 (+) True G109249
TU147696 lncRNA downstream 3136 6744461 ~ 6756941 (+) True G109341
TU147697 lncRNA downstream 3136 6744461 ~ 6756941 (+) False G109341
TU147723 lncRNA downstream 203440 6944765 ~ 6985492 (+) False blcap
TU147752 lncRNA downstream 293065 7034390 ~ 7052796 (+) False G109381
TU147739 lncRNA downstream 301105 7042430 ~ 7044250 (+) False G109378
XM_022675297.1 mRNA upstream 33771 6682180 ~ 6699512 (+) False LOC103026961
XM_022675294.1 mRNA upstream 33771 6682180 ~ 6699512 (+) True LOC103026961
XM_022675295.1 mRNA upstream 33771 6682180 ~ 6699512 (+) False LOC103026961
XM_022675296.1 mRNA upstream 33771 6682180 ~ 6699512 (+) False LOC103026961
XM_022675291.1 mRNA upstream 38290 6682180 ~ 6694993 (+) False LOC103026961
XM_022675306.1 mRNA downstream 32851 6774176 ~ 6810258 (+) False rims4
XM_007258487.2 mRNA downstream 181225 6922550 ~ 6928741 (+) True psmf1
XM_007258486.2 mRNA downstream 203451 6944776 ~ 6947611 (+) False blcap
XM_022675061.1 mRNA downstream 254445 6995770 ~ 7041534 (+) True LOC103032809
XM_015608180.2 mRNA downstream 329370 7070695 ~ 7072091 (+) True LOC103023115
TU147548 other upstream 478226 6253210 ~ 6255057 (+) False G109248
TU147549 other upstream 478226 6253210 ~ 6255057 (+) True G109248
TU147542 other upstream 566621 6164599 ~ 6166662 (+) True G109242
TU147232 other upstream 1423526 5306050 ~ 5309757 (+) True G108999
TU147130 other upstream 1671432 5056578 ~ 5061851 (+) False LOC103029387
TU147722 other downstream 203440 6944765 ~ 6947602 (+) True blcap
TU147724 other downstream 203440 6944765 ~ 6970579 (+) False blcap
TU147963 other downstream 526546 7267871 ~ 7269592 (+) True G109527
TU147984 other downstream 700644 7441969 ~ 7448990 (+) False gbx2
TU148012 other downstream 955824 7697149 ~ 7699958 (+) False LOC103043571

Expression Profile